View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3391_low_20 (Length: 250)
Name: NF3391_low_20
Description: NF3391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3391_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 43194603 - 43194361
Alignment:
| Q |
1 |
taattttcacttaatttacttttgcatgattatacttgcaattgaagtattaattagattttgattatttgagtaattaatt-------atatgactaca |
93 |
Q |
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| T |
43194603 |
taattttcacttaatttacttttgcatgattacacttgcaattgaagtattaattagattttgattgtttgagtaattaattcattgatatatgactaca |
43194504 |
T |
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| Q |
94 |
cttacgattgcaacggagtccgcggccgcaatggcaaggatatcagcacatgatacaacgccaggacatacattctctacagctgtcttaatgttgtcaa |
193 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43194503 |
cttacgattgcaacggagtccgcggcagcgatggcaaggatatcagcacatgatacaacgccaggacatacattctctacggctgtcttaatgttgtcaa |
43194404 |
T |
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| Q |
194 |
tgacatcaaatccacgagcagagtttctattcgggtttgcgtt |
236 |
Q |
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| T |
43194403 |
tgacatcaaatccacgagcagagtttctattcggatttgcgtt |
43194361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 92 - 244
Target Start/End: Complemental strand, 43180222 - 43180070
Alignment:
| Q |
92 |
cacttacgattgcaacggagtccgcggccgcaatggcaaggatatcagcacatgatacaacgccaggacatacattctctacagctgtcttaatgttgtc |
191 |
Q |
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||||||| |||||||| ||||| ||||| |||||||| ||||||||||||||||||||||| || || ||||| |||||||| |||||||| |||||||| |
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| T |
43180222 |
cacttacaattgcaacagagtctgcggcagcaatggctaggatatcagcacatgatacaactccggggcatacgttctctacggctgtctttatgttgtc |
43180123 |
T |
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| Q |
192 |
aatgacatcaaatccacgagcagagtttctattcgggtttgcgttcatctcac |
244 |
Q |
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| T |
43180122 |
gatgacatcaaatccacgagcggagtttctatttggatttgcattcttctcac |
43180070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 93 - 242
Target Start/End: Complemental strand, 43189050 - 43188901
Alignment:
| Q |
93 |
acttacgattgcaacggagtccgcggccgcaatggcaaggatatcagcacatgatacaacgccaggacatacattctctacagctgtcttaatgttgtca |
192 |
Q |
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|||||| |||||||||||||| | ||| |||||||||||||||||||||||||||||||| || || ||||| |||||||| || ||||| ||||||||| |
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| T |
43189050 |
acttacaattgcaacggagtctgtggcagcaatggcaaggatatcagcacatgatacaactccggggcatacgttctctaccgccgtctttatgttgtca |
43188951 |
T |
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| Q |
193 |
atgacatcaaatccacgagcagagtttctattcgggtttgcgttcatctc |
242 |
Q |
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|||||||| ||||| ||| ||||||| |||||||| ||||||| |||| |
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| T |
43188950 |
atgacatcgaatcctcgaacagagttcttattcgggagtgcgttcttctc |
43188901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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