View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3391_low_22 (Length: 242)
Name: NF3391_low_22
Description: NF3391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3391_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 41379356 - 41379130
Alignment:
| Q |
1 |
gtttctaacgaattaggtgatacctagagaaaccaaaacacatattttgctttggtataannnnnnnccagatgctggtttattatgcctagagaaacca |
100 |
Q |
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| T |
41379356 |
gtttctaacgaattaggtgatacctagagaaaccaaaacacatattttgctttggtataatttttttccagatgctggtttattatgcctagggaaacca |
41379257 |
T |
|
| Q |
101 |
aaaccatcccaaagttccttcatcccaaagtttgtctcccatattttgcttttaaag-nnnnnnnnagtgaacagctttgtaaacaacatttaatcttgt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||| |
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| T |
41379256 |
aaaccatcccaaagttccttcatcccaaagtttgtctcccatattttgctttttaagtttttttttagtgaacagctttgcaaacaacatttaatcttgt |
41379157 |
T |
|
| Q |
200 |
gtcagctgcattttgctaactacaaac |
226 |
Q |
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||||||||||||||||||||||||||| |
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| T |
41379156 |
gtcagctgcattttgctaactacaaac |
41379130 |
T |
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