View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3391_low_5 (Length: 427)
Name: NF3391_low_5
Description: NF3391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3391_low_5 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 427
Target Start/End: Original strand, 12338339 - 12338745
Alignment:
| Q |
17 |
atgatcctggtctgaaattcaaacccggaaatatagttatggtggcacagaaataaagggtaggtcgttgagttcatacctttcaaagacacataattcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12338339 |
atgatcctggtctgaaattcaaacccggaaatatagttatggtggcacagaaataaagggtaggtcgttgagttcatacctttcaaagacacataattcc |
12338438 |
T |
|
| Q |
117 |
cacatgacctttcgcaatcaagctagcccaaaagttgaatgcaatggaaatagacagcttgttgaatccttcatgtaaatacgtaccttatagttatagc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12338439 |
cacatgacctttcgcaatcaagctagcccaaaagttgaatgcaatggaaatagacagcttgttgaatccttcatgtaaatacgtacc------ttatagc |
12338532 |
T |
|
| Q |
217 |
tagattgactattaatgtgagagagagctnnnnnnnntgttattgataggaaggaccgctacacttaatttggttaattatttgttgcttttt--tgtgt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12338533 |
tagattgactattaatgtgagagagagctaaaaaaaatgttattgataggaaggaccactacacttaatttggttaattatttgttgcttttttgtgtgt |
12338632 |
T |
|
| Q |
315 |
gtatttcagagcacatgcatgcatgatgcatcaatgtttatccttttttagtgatagtaatatcactttcacactcatttttaatagattcacataaagt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12338633 |
gtatttcagagcacatgcatgcatgatgcatcaatgtttatccttttttagtgatagtaatatcactttcacactcatttttaatagattcacataaagt |
12338732 |
T |
|
| Q |
415 |
ggtggtgagacac |
427 |
Q |
| |
|
| |||| |||||| |
|
|
| T |
12338733 |
gatggtaagacac |
12338745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University