View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3391_low_9 (Length: 351)
Name: NF3391_low_9
Description: NF3391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3391_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 7 - 335
Target Start/End: Original strand, 8072847 - 8073191
Alignment:
| Q |
7 |
ctgatatgaactcaacagcagaagagttgatcgacgcggcctcgtatcaacagttcgatgaaactacaacaaatagagttttggcagcagctcaagctag |
106 |
Q |
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| T |
8072847 |
ctgatctgaactcaacagcagaagagttgatcgacgcggcctcgtatcaacagttcgatgaaactacaacaaatagagttttggcagcagctcaagctag |
8072946 |
T |
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| Q |
107 |
gaagacaaggcttcaaattttcaggctcaagaaaccttttggaaacaatagcaaacaatatttaatttgatgtatattttatttccttcttagtttcctc |
206 |
Q |
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| T |
8072947 |
gaagacaaggcttcaaattttcaggctcaagaaaccttttggaaacaatagcaaacaatatttaatttgatgtatattttatttccttcttagtttcctc |
8073046 |
T |
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| Q |
207 |
tctcttttagaaattcaaatgtactgaaaaggaagttttgtaaagatatttg----------------annnnnnngtgtgatttaaacatggtatttta |
290 |
Q |
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| T |
8073047 |
tctcttttagaaattcaaatgtactgaaaaggaagttttgtaaagatatttgatttttttaatgcatgatttttttgtgtgatttaaacatggtatttta |
8073146 |
T |
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| Q |
291 |
tggcatgaagttattgcaccgtgaaatgtcatatgaaattgaaac |
335 |
Q |
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| T |
8073147 |
tggcatgaagttattgcaccgtgaaatgtcatatgaaattgaaac |
8073191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 90 - 223
Target Start/End: Original strand, 8069323 - 8069454
Alignment:
| Q |
90 |
gcagcagctcaagctaggaagacaaggcttcaaattttcaggctcaagaaaccttttggaaacaatagcaaacaatatttaatttgatgtatattttatt |
189 |
Q |
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|||||||||||||||||| | | ||||||||| | ||||||||||| ||||||||||||||||| || |||||| ||| | |||||||| ||||||||| |
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| T |
8069323 |
gcagcagctcaagctaggcaaagaaggcttcagaaattcaggctcaaaaaaccttttggaaacaagagtaaacaacattcattttgatgtttattttatt |
8069422 |
T |
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| Q |
190 |
tccttcttagtttcctctctcttttagaaattca |
223 |
Q |
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| T |
8069423 |
tcctttttagtttc--ctctcttttagaaattca |
8069454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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