View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3392_high_13 (Length: 306)
Name: NF3392_high_13
Description: NF3392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3392_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 2623721 - 2623442
Alignment:
| Q |
17 |
caatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtcc |
116 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||| || || ||||||||||||||||||| ||| | |||||||||||||||||||||||| |
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| T |
2623721 |
caatgtgtttccttaatgaccttagattataagtttttatgtctctgccatcaattgtcactatcccttcaagtggatcatagaacctctcaattagtcc |
2623622 |
T |
|
| Q |
117 |
tatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacattaggt |
216 |
Q |
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|
||||||||||||||||||||||||||||| ||| | || | ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
2623621 |
tatgatcgttgatttcccagaaccacttttccctaccagagctgtcgattttccagcatcaaatttaatcgaaaatccttgaaaaatcatcacattaggt |
2623522 |
T |
|
| Q |
217 |
ctagacggatatgcaaaatatacatcacaaaattcaatttttcctattaactttttagctttgtaaccttctatttcatc |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
2623521 |
ctagacggatatgcaaaatatacatcacaaaattcaatttttcctattaactttatagctttgtgaccttctatttcatc |
2623442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 2592177 - 2591898
Alignment:
| Q |
17 |
caatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtcc |
116 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| ||||||||||||| || ||||||||||||||||||| ||| | |||||||||||||||||||||||| |
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| T |
2592177 |
caatgtgtttccttagtgaccttagattataaatttttatgtccctaccatcaattgtcactatccctttaagtggatcatagaacctctcaattagtcc |
2592078 |
T |
|
| Q |
117 |
tatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacattaggt |
216 |
Q |
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|||||||||||||||||||||||||||||| || | ||| |||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
2592077 |
tatgatcgttgatttcccagaaccactttctcctaccaacgctgttgattttccggcatcaattttaatcgagaatccttcaaaaatcatcacatttggt |
2591978 |
T |
|
| Q |
217 |
ctagacggatatgcaaaatatacatcacaaaattcaatttttcctattaactttttagctttgtaaccttctatttcatc |
296 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
2591977 |
ctagacggatatgcaaaataaacatcacaaaattcaatttttcctattaacttttcagctttgtaaccttctatttcatc |
2591898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 2569093 - 2569361
Alignment:
| Q |
17 |
caatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtcc |
116 |
Q |
| |
|
||||||||| |||||||||||||| |||||| || |||||||| || || ||||||||||||||||||| ||| | ||||||||| || ||||| ||||| |
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| T |
2569093 |
caatgtgttcccttaatgaccttagattatatgtctttatgtctctaccatcaattgtcactatccctttaagtggatcatagaatctttcaataagtcc |
2569192 |
T |
|
| Q |
117 |
tatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacattaggt |
216 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
2569193 |
tatgattgttgattttccagaaccactttcccctaccaaagctgtcgattttccagcatcaattttaatcgagaacccttgaaaaatcatcacattaggt |
2569292 |
T |
|
| Q |
217 |
ctagacggatatgcaaaatatacatcacaaaattcaatttttcctattaactttttagctttgtaacct |
285 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||| ||||||| |||||||||| |||| ||||||||||||| |
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|
| T |
2569293 |
ctagccggatatgcaaaatgtacatcaaaaagttcaattattcctattaatttttcagctttgtaacct |
2569361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 2672468 - 2672740
Alignment:
| Q |
17 |
caatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtcc |
116 |
Q |
| |
|
||||||||||||| |||||||| | |||||| || |||||||| || |||||||||||||||||||||| ||| | |||||||| |||||||||||||| |
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|
| T |
2672468 |
caatgtgtttcctcaatgacctgagattatatgtctttatgtctctaccgtcaattgtcactatccctttaagtgggtcatagaatctctcaattagtcc |
2672567 |
T |
|
| Q |
117 |
tatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacattaggt |
216 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||| | |||| | || |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
2672568 |
tatgattgtcgattttccagaaccactttcccctaccaaagccgttgattttcctgcatcaattttaatcgagaatccttgaaaaatcataacattaggt |
2672667 |
T |
|
| Q |
217 |
ctagacggatatgcaaaatatacatcacaaaattcaatttttcctattaactttttagctttgtaaccttcta |
289 |
Q |
| |
|
|||| ||||||| |||||||||||||| || ||||||||||||||||||||||| ||||| ||||| ||||| |
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|
| T |
2672668 |
ctagctggatatgaaaaatatacatcacgaagttcaatttttcctattaacttttcagcttggtaactttcta |
2672740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 2596652 - 2596924
Alignment:
| Q |
17 |
caatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtcc |
116 |
Q |
| |
|
|||| |||||||||||||| | || |||||| || |||||||| || |||||||||||||||||||||| || | ||||||||| |||||||||||||| |
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|
| T |
2596652 |
caatatgtttccttaatgatcgtagattatatgtctttatgtctctaccgtcaattgtcactatccctttaaatggatcatagaatctctcaattagtcc |
2596751 |
T |
|
| Q |
117 |
tatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacattaggt |
216 |
Q |
| |
|
||| || || ||||| ||||||||||||||||| | |||| | ||||||||||| |||||||||||||||||||| ||||||||||| | ||||||||| |
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|
| T |
2596752 |
tataattgtcgattttccagaaccactttcccctaccaaagccgtcgattttcctgcatcaattttaatcgagaacccttgaaaaattgtaacattaggt |
2596851 |
T |
|
| Q |
217 |
ctagacggatatgcaaaatatacatcacaaaattcaatttttcctattaactttttagctttgtaaccttcta |
289 |
Q |
| |
|
||| |||||||||||||||||||||| || |||||||||||||||||| |||| |||| |||||||||||| |
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|
| T |
2596852 |
ctacctggatatgcaaaatatacatcacgaagttcaatttttcctattaatttttcagctctgtaaccttcta |
2596924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 2641308 - 2641578
Alignment:
| Q |
17 |
caatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtcc |
116 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| ||||| || || ||||||||||||||||||| || | ||||||||| |||||||||||||| |
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|
| T |
2641308 |
caatgtgtttccttaacgaccttagattataagactttatatcttcaccatcaattgtcactatccctttaattggatcatagaatctctcaattagtcc |
2641407 |
T |
|
| Q |
117 |
tatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacattaggt |
216 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| | |||| | |||||||||||||| || |||||||| ||||| |||||||| ||||||||||||||| |
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|
| T |
2641408 |
tatgattgttgatttccctgaaccactttccccgaccaaagccgtcgattttccagcgtcgattttaattgagaacccttgaaagatcatcacattaggt |
2641507 |
T |
|
| Q |
217 |
ctagacggatatgcaaaatatacatcacaaaattcaatttttcctattaactttttagctttgtaaccttc |
287 |
Q |
| |
|
||| |||||||||||||| ||||||| || ||||||||| ||||| || ||||| |||||||||||||| |
|
|
| T |
2641508 |
ctacccggatatgcaaaatctacatcaagaagttcaattttccctatcaaatttttggctttgtaaccttc |
2641578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 289
Target Start/End: Complemental strand, 2440231 - 2439959
Alignment:
| Q |
17 |
caatgtgtttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtcc |
116 |
Q |
| |
|
|||| |||||||||||||| | || |||||||||||||||||| || || |||| |||||||||||||| ||| | ||||||||| |||||||||||||| |
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|
| T |
2440231 |
caatatgtttccttaatgatcgtagattataagtttttatgtctctaccatcaactgtcactatccctttaagtggatcatagaatctctcaattagtcc |
2440132 |
T |
|
| Q |
117 |
tatgatcgttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacattaggt |
216 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||| | |||| | || |||||||| || ||||||| ||| ||||| |||||||| | |||||||||||| |
|
|
| T |
2440131 |
tatgattgtcgattttccagaaccactttccccaaccaaagccgttgattttccggcgtcaatttcaatagagaacccttgaaagaccatcacattaggc |
2440032 |
T |
|
| Q |
217 |
ctagacggatatgcaaaatatacatcacaaaattcaatttttcctattaactttttagctttgtaaccttcta |
289 |
Q |
| |
|
|||| |||||||| ||||| ||| ||| |||| ||||||||||||| ||||||| |||| || ||||||||| |
|
|
| T |
2440031 |
ctagccggatatgaaaaatgtacgtcatgaaatacaatttttcctatcaacttttcagctctgaaaccttcta |
2439959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 25 - 287
Target Start/End: Complemental strand, 2450948 - 2450686
Alignment:
| Q |
25 |
ttccttaatgaccttatattataagtttttatgtcccttccgtcaattgtcactatcccttgaagagaatcatagaacctctcaattagtcctatgatcg |
124 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| || || || ||||| ||||||||||||| | | |||||| || |||||||||||||||||||| | |
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|
| T |
2450948 |
ttccttaatgaccttagattataagactttatatcactaccatcaatcgtcactatcccttttattggatcataaaatctctcaattagtcctatgattg |
2450849 |
T |
|
| Q |
125 |
ttgatttcccagaaccactttcccccatcaaacctgtcgattttccagcatcaattttaatcgagaatccttgaaaaatcatcacattaggtctagacgg |
224 |
Q |
| |
|
| ||||| ||||||||||||||||| | |||| | || ||||| || ||| ||||||||||||||| |||||||| || || ||||||| |||||||| |
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|
| T |
2450848 |
tcgattttccagaaccactttccccgaccaaagccgttgatttaccgacattaattttaatcgagaacccttgaaagatgattgcattaggcctagacgg |
2450749 |
T |
|
| Q |
225 |
atatgcaaaatatacatcacaaaattcaatttttcctattaactttttagctttgtaaccttc |
287 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
2450748 |
atatgcaaaatgtacatcatgaaattcaatttttcctatcaacttttctactttgtaaccttc |
2450686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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