View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3392_high_16 (Length: 257)
Name: NF3392_high_16
Description: NF3392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3392_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 1845365 - 1845140
Alignment:
| Q |
20 |
tctcgaacatcacatcgtttataaaaacacaattggatgttcaaaaagggatactatctcaaatatttgatttatccaatccaattgaaaaacattgcat |
119 |
Q |
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| T |
1845365 |
tctcgaacatcgcatcgtttataaaaacacaattggatgttcgaaaagggatactatctcaaatatttgatttatccaatccaatttaaaaacattgcat |
1845266 |
T |
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| Q |
120 |
ctgcatttgattgtatatgaaagatgtgcagtccactacctatttataggtaaggtttcctcccaatgcattataaatctgctgatgtgggtcttattac |
219 |
Q |
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| T |
1845265 |
ctgcatttgattgaatatgaaagatgtgcagtccactacctatttataggtaaggtttcctcccaatgcattataaatctgctgatgtgggtcttattac |
1845166 |
T |
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| Q |
220 |
aatctttctatttaactttgtatatt |
245 |
Q |
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| T |
1845165 |
aatctttctattcaactttgtatatt |
1845140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 133 - 245
Target Start/End: Complemental strand, 1847472 - 1847361
Alignment:
| Q |
133 |
tatatgaaagatgtgcagtccactacctatttataggtaaggtttcctcccaatgcattataaatctgctgatgtgggtcttattacaatctttctattt |
232 |
Q |
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| T |
1847472 |
tatatgaaagatgtgaagtccattacctatttatatgaaaggtttcctcccaatgcattat-aagctgccgttgtgggtcttattacaatctttctattc |
1847374 |
T |
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| Q |
233 |
aactttgtatatt |
245 |
Q |
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| T |
1847373 |
aactttgtatatt |
1847361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 245
Target Start/End: Complemental strand, 1819925 - 1819736
Alignment:
| Q |
56 |
atgttcaaaaagggatactatctcaaatatttgatttatccaatccaattgaaaaacattgcatctgcatttgattgtatatgaaagatgtgcagtccac |
155 |
Q |
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| T |
1819925 |
atgttcaaaaaggtatatcacctcaaatatttgttttatccaatcaaatttaaaaacgttgaatttgcatttgatagtatttgaattgtgttcaatcccc |
1819826 |
T |
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| Q |
156 |
tacctatttataggtaaggtttcctc-ccaatgcattataaatctgctgatgtgggtcttattacaatctttctatttaactttgtatatt |
245 |
Q |
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| T |
1819825 |
tacctatttatagctaaggtttcctctcaaatgctatat-aagctgccgatgtgggtcatattacaatctttttattcaacttggtatatt |
1819736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 1848316 - 1848177
Alignment:
| Q |
98 |
atccaattgaaaaacatt-gcatctgcatttgattgtatatgaaagatgtgcagtccactacctatttataggtaaggtttcctcccaatgcattataaa |
196 |
Q |
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|||||||| |||| |||| | |||||||||| ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||| |||||| |||||| |
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| T |
1848316 |
atccaatttaaaagcatttgtatctgcatttaattgtatttgaaagatgtgcagtccaccacctatttataagtaaggtttcctctcaatgctttataag |
1848217 |
T |
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| Q |
197 |
tctgctgatgtgggtcttattacaatctttctatttaactt |
237 |
Q |
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| T |
1848216 |
ac-gccaatgtgggacttattactatctctctattcaactt |
1848177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 1842920 - 1842827
Alignment:
| Q |
143 |
atgtgcagtccactacctatttataggtaaggtttcctcccaatgcattataaatctgctgatgtgggtcttattacaatctttctatttaactt |
237 |
Q |
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||||||| |||||| ||||||||||| ||||||||||||||||||| |||| || |||| |||||||| |||||||| |||| |||||| ||||| |
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| T |
1842920 |
atgtgcaatccactgcctatttatagctaaggtttcctcccaatgctttat-aagctgccgatgtgggacttattactatctctctattcaactt |
1842827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 1836495 - 1836407
Alignment:
| Q |
106 |
gaaaaacattgcatctgcatttgattgtatatgaaagatgtgcagtccactacctatttataggtaaggtttcctcccaatgcattataa |
195 |
Q |
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| T |
1836495 |
gaaaaatattgcatttgcatttgattgtatttgaaatatg-acagtccactacttatttataactaaggtgtcctctaaatgctttataa |
1836407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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