View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3392_high_18 (Length: 250)
Name: NF3392_high_18
Description: NF3392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3392_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 35 - 233
Target Start/End: Original strand, 41110504 - 41110702
Alignment:
| Q |
35 |
gtaggcttaaagagtaaatgtttgtataggaccagtgccaatggaatatagttgaggtttttaaattgttgtaccaaattaaactcagaagatgaagtcc |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41110504 |
gtaggcttaaagagtaaatgtttgtataggaccagtgccaatggaatatagttgaggtttttaaattgttgtaccaaattaaactcagaagataaagtcc |
41110603 |
T |
|
| Q |
135 |
agcttgcgacctattctcatcatctacatatttgttgttttctatgtgtatagaagagtatttttagtaaaaaagtttggtatattaattaaattacac |
233 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41110604 |
agcttccgacctattctcatcatctacatatttgttgttttctatgtgtatagaagagtatttttagtaaaaaagtttggtatattaattaaattacac |
41110702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University