View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3392_high_20 (Length: 250)
Name: NF3392_high_20
Description: NF3392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3392_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 1845071 - 1844907
Alignment:
| Q |
9 |
attatatttgaggcaatctagtattataagtttataaggacttcatccatttagtcaattgtattcataattatatgaggtcgtgttagcaaagttctaa |
108 |
Q |
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| T |
1845071 |
attatatttgaggcaatctagtattataagtttataaggacttcatccatttagtcaattgtattcataagtatatgaggtcgtgttagcaaagttctaa |
1844972 |
T |
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| Q |
109 |
attttagttgtaaaactcannnnnnncatacgaactatatggacttgtattggaacaagcattca |
173 |
Q |
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| T |
1844971 |
attttagttgtaaaactcatttttctcatacgaactatatggacttgtattggaacaagcattca |
1844907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 1819639 - 1819508
Alignment:
| Q |
1 |
aaataagaattatatttgaggcaatctagtattataagtttataaggacttcatccatttagtcaattgtattcata-----attatatgaggtcgtgtt |
95 |
Q |
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||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| || ||||||||||||||| |
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| T |
1819639 |
aaataagaattatatttgactcaatctagtactataagttcgtaaggacttcatccatttagtcaattgcattcataagtatatgatatgaggtcgtgtt |
1819540 |
T |
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| Q |
96 |
agcaaagttctaaattttagttgtaaaactca |
127 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
1819539 |
agcaaagttctaaattttagttgtaaaactca |
1819508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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