View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3392_high_21 (Length: 249)
Name: NF3392_high_21
Description: NF3392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3392_high_21 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 39839882 - 39840112
Alignment:
| Q |
19 |
ccttcgtcttcgtcttctgctgatcttaccgcctcggaaatagtagacagatttcgtcttcgtctattgagtcttcgtgctcgaaggtcaccacctggtg |
118 |
Q |
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| T |
39839882 |
ccttcgtcttcgtcttctgctgatcttaccgcctcggaaatagtcagcagatttcgtcttcgtctattgagtcttcgtgctcgaaggtcaccacctggtg |
39839981 |
T |
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| Q |
119 |
agtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcactattctcaatattgtttgttaatggaagatgataataatgtgttcca |
218 |
Q |
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| T |
39839982 |
agtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcactattctcaatattgtttgttaatggaagatgataataatgtgttcca |
39840081 |
T |
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| Q |
219 |
ctgtagagaattggggcttagggattttgag |
249 |
Q |
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| T |
39840082 |
ctgtagagaattgtggcttagggattttgag |
39840112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 35161583 - 35161815
Alignment:
| Q |
20 |
cttcgtcttcgtcttctgctgatcttaccgcc---tcggaaatagtagacagatttcgtcttcgtctattgagtcttcgtgctcgaaggtcacc---acc |
113 |
Q |
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| T |
35161583 |
cttcgtcttcgtcttctgctgctcctaccaccccctcggaaatagtcagcagatttcgtcttcgtgtattgagtcttcgtgctcgaaggtcaccaccacc |
35161682 |
T |
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| Q |
114 |
tggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcactattctcaatattgtttgttaatggaagatgataataatgtg |
213 |
Q |
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| T |
35161683 |
tggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcactattctcaatgttgtttgttaatggaagatg---ataatgtg |
35161779 |
T |
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| Q |
214 |
ttccactgtagagaattggggcttagggattttgag |
249 |
Q |
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| T |
35161780 |
ttccactttagagaattggggcttagggattttgag |
35161815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 44798526 - 44798296
Alignment:
| Q |
20 |
cttcgtcttcgtcttctgctgatcttaccgcctc---ggaaatagtagacagatttcgtcttcgtctattgagtcttcgtgctcgaaggtcaccacc--- |
113 |
Q |
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| T |
44798526 |
cttcgtcttcgtcttctgctgctcctaccacccccttggaaatagtcagcagatttcgtcttcgtctattgagtcttcgtgctcgaaggtcaccaccacc |
44798427 |
T |
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| Q |
114 |
tggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcactattctcaatattgtttgttaatggaagatgataataatgtg |
213 |
Q |
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| T |
44798426 |
tggtgagtgagtttaacatttatattgttctgttgttcgttcgttatgtttcattcactattctcaatgttgtttgttaatggaagatga---taatgtg |
44798330 |
T |
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| Q |
214 |
ttccactgtagagaatt-ggggcttagggattttgag |
249 |
Q |
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|||| |||| ||||| ||||||||||||||||||| |
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| T |
44798329 |
ttccgctgt---gaattgggggcttagggattttgag |
44798296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 39844789 - 39844923
Alignment:
| Q |
19 |
ccttcgtcttcgtcttctgctgatcttaccgcctcggaaatagtagacagatttcgtcttcgtctattgagtcttcg------tgctcgaaggt---cac |
109 |
Q |
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| T |
39844789 |
ccttcgtcttcgtcttttgctgatcttaccgactcggaaatagtcagcagataccgtcttcgtctatctcgtcttggtccatttgctcgaaggtcaccac |
39844888 |
T |
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| Q |
110 |
cacctggtgagtgagtttaacatttatattgttct |
144 |
Q |
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| T |
39844889 |
cacctggtgagtgagtttaacatttatattattct |
39844923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 39844963 - 39845019
Alignment:
| Q |
190 |
ttaatggaagatgataataatgtgttccactgtagagaattggggcttagggattttgag |
249 |
Q |
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| T |
39844963 |
ttaatggaagatgataa---tgtgttccactgtagagaattggggcttagggattttgag |
39845019 |
T |
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