View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3392_high_23 (Length: 236)

Name: NF3392_high_23
Description: NF3392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3392_high_23
NF3392_high_23
[»] chr2 (2 HSPs)
chr2 (4-221)||(34456222-34456439)
chr2 (3-58)||(37038685-37038740)
[»] chr1 (4 HSPs)
chr1 (4-52)||(8894935-8894983)
chr1 (4-68)||(6596661-6596725)
chr1 (4-52)||(27124101-27124149)
chr1 (4-36)||(43738191-43738223)
[»] chr8 (4 HSPs)
chr8 (1-52)||(7421394-7421445)
chr8 (1-50)||(45191958-45192007)
chr8 (4-58)||(11257722-11257776)
chr8 (4-61)||(15227753-15227809)
[»] chr7 (2 HSPs)
chr7 (4-58)||(48843738-48843792)
chr7 (4-58)||(44057535-44057589)
[»] chr5 (2 HSPs)
chr5 (4-52)||(11970377-11970425)
chr5 (4-53)||(13974457-13974506)
[»] chr3 (5 HSPs)
chr3 (4-52)||(48901890-48901938)
chr3 (21-54)||(21205601-21205634)
chr3 (4-53)||(31190659-31190708)
chr3 (4-52)||(48903469-48903517)
chr3 (4-52)||(50646060-50646108)
[»] scaffold0123 (1 HSPs)
scaffold0123 (4-56)||(27941-27993)
[»] chr4 (1 HSPs)
chr4 (4-64)||(47817922-47817982)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 34456439 - 34456222
Alignment:
Q  4 atttcttaatttgtatataaaaatcttaaacgacactcatgttaaaacgaagggattagttcactagaaaaaccaagctagttgttggtaaggagtaaag 103  Q
    |||||||||||| ||||| ||||| ||||| ||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34456439 atttcttaatttttatatgaaaattttaaaggacgctcatattaaaatgaagggattagttcactagaaaaaccaagctagttgttggtaaggagtaaag 34456340  T
Q  104 atcaaacggtgtcaacnnnnnnnctaagc-tagttgttggtaaggaatagagatcaaactgtaccaacaaactaagcactatggcctcacgagaacgtac 202  Q
    ||||||||||||||||       |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34456339 atcaaacggtgtcaac-aaaaaactaagcttagttgttgttaaggaatagagatcaaactgtaccaacaaactaagcactatggcctcacgagaatgtac 34456241  T
Q  203 atgcatgctaaactatatt 221  Q
    |||||||||||||||||||    
T  34456240 atgcatgctaaactatatt 34456222  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 37038740 - 37038685
Alignment:
Q  3 tatttcttaatttgtatataaaaatcttaaacgacactcatgttaaaacgaaggga 58  Q
    ||||||||||| ||| | ||||||||||||||||||||||| || ||||| |||||    
T  37038740 tatttcttaatatgtgtgtaaaaatcttaaacgacactcattttgaaacggaggga 37038685  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 8894983 - 8894935
Alignment:
Q  4 atttcttaatttgtatataaaaatcttaaacgacactcatgttaaaacg 52  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  8894983 atttcttaatatgtatataaaaatcttaaacgacactcattttaaaacg 8894935  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 6596661 - 6596725
Alignment:
Q  4 atttcttaatttgtatataaaaatcttaaacgacactcatgttaaaacgaagggattagttcact 68  Q
    |||||||||||||| | |||||||||||||| |||||||| || ||||||| ||| |||| ||||    
T  6596661 atttcttaatttgtgtctaaaaatcttaaacaacactcattttgaaacgaatggagtagtacact 6596725  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 27124101 - 27124149
Alignment:
Q  4 atttcttaatttgtatataaaaatcttaaacgacactcatgttaaaacg 52  Q
    |||||||||||||||| |||||| ||||||| ||| |||| ||||||||    
T  27124101 atttcttaatttgtatgtaaaaaccttaaacaacattcattttaaaacg 27124149  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 43738223 - 43738191
Alignment:
Q  4 atttcttaatttgtatataaaaatcttaaacga 36  Q
    |||||||||||||||||| ||||||||||||||    
T  43738223 atttcttaatttgtatatcaaaatcttaaacga 43738191  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7421445 - 7421394
Alignment:
Q  1 tatatttcttaatttgtatataaaaatcttaaacgacactcatgttaaaacg 52  Q
    |||||||||||||||||||||||||||||||||||  |||| | ||||||||    
T  7421445 tatatttcttaatttgtatataaaaatcttaaacgttactcgttttaaaacg 7421394  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 45192007 - 45191958
Alignment:
Q  1 tatatttcttaatttgtatataaaaatcttaaacgacactcatgttaaaa 50  Q
    ||||||||||||||||| ||||||||||||| || |||||||| ||||||    
T  45192007 tatatttcttaatttgtgtataaaaatcttatacaacactcattttaaaa 45191958  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 11257722 - 11257776
Alignment:
Q  4 atttcttaatttgtatataaaaatcttaaacgacactcatgttaaaacgaaggga 58  Q
    |||||||||||||| | | ||||||||||||| |||||||  |||||||||||||    
T  11257722 atttcttaatttgtgtgtcaaaatcttaaacggcactcattgtaaaacgaaggga 11257776  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 15227753 - 15227809
Alignment:
Q  4 atttcttaatttgtatataaaaatcttaaacgacactcatgttaaaacgaagggatta 61  Q
    |||||||||| ||  | |||||||||||||||||| |||| |||||||||||||||||    
T  15227753 atttcttaatatgcgtgtaaaaatcttaaacgacattcat-ttaaaacgaagggatta 15227809  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 48843738 - 48843792
Alignment:
Q  4 atttcttaatttgtatataaaaatcttaaacgacactcatgttaaaacgaaggga 58  Q
    |||||||||| ||||| |||||| |||||||||||||||| |||||| |||||||    
T  48843738 atttcttaatatgtatgtaaaaaccttaaacgacactcattttaaaatgaaggga 48843792  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 44057589 - 44057535
Alignment:
Q  4 atttcttaatttgtatataaaaatcttaaacgacactcatgttaaaacgaaggga 58  Q
    |||||||||||||| | |||||||||||||| |||||||| || ||||| |||||    
T  44057589 atttcttaatttgtgtgtaaaaatcttaaacaacactcattttgaaacggaggga 44057535  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 11970377 - 11970425
Alignment:
Q  4 atttcttaatttgtatataaaaatcttaaacgacactcatgttaaaacg 52  Q
    |||||||||||||| | ||||||||||||| ||||||||| ||||||||    
T  11970377 atttcttaatttgtgtgtaaaaatcttaaatgacactcattttaaaacg 11970425  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 13974457 - 13974506
Alignment:
Q  4 atttcttaatttgtatataaaaatcttaaacgacactcatgttaaaacga 53  Q
    |||||||||| ||| | |||||||||||||||||| |||| |||||||||    
T  13974457 atttcttaatatgtgtgtaaaaatcttaaacgacattcattttaaaacga 13974506  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 48901890 - 48901938
Alignment:
Q  4 atttcttaatttgtatataaaaatcttaaacgacactcatgttaaaacg 52  Q
    |||||||||| ||||| |||||| |||||||||||||||| ||||||||    
T  48901890 atttcttaatatgtatgtaaaaaacttaaacgacactcattttaaaacg 48901938  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 21205601 - 21205634
Alignment:
Q  21 taaaaatcttaaacgacactcatgttaaaacgaa 54  Q
    ||||||||||||||||||||||| ||||||||||    
T  21205601 taaaaatcttaaacgacactcattttaaaacgaa 21205634  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 31190659 - 31190708
Alignment:
Q  4 atttcttaatttgtatataaaaatcttaaacgacactcatgttaaaacga 53  Q
    |||||||||| ||||| |||||| ||||||||||| |||| |||||||||    
T  31190659 atttcttaatatgtatgtaaaaaccttaaacgacattcattttaaaacga 31190708  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 48903469 - 48903517
Alignment:
Q  4 atttcttaatttgtatataaaaatcttaaacgacactcatgttaaaacg 52  Q
    |||||||||| ||||| |||||| |||||||||||||||| | ||||||    
T  48903469 atttcttaatatgtatgtaaaaaacttaaacgacactcatttaaaaacg 48903517  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 50646108 - 50646060
Alignment:
Q  4 atttcttaatttgtatataaaaatcttaaacgacactcatgttaaaacg 52  Q
    |||| ||||| ||| | ||||||||||||||||||||||| ||||||||    
T  50646108 attttttaatatgtgtgtaaaaatcttaaacgacactcattttaaaacg 50646060  T

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Target: scaffold0123 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 27993 - 27941
Alignment:
Q  4 atttcttaatttgtatataaaaatcttaaacgacactcatgttaaaacgaagg 56  Q
    |||||||||||| | |||||||||||||||||||||  || | ||||||||||    
T  27993 atttcttaatttatgtataaaaatcttaaacgacacctatttaaaaacgaagg 27941  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 47817922 - 47817982
Alignment:
Q  4 atttcttaatttgtatataaaaatcttaaacgacactcatgttaaaacgaagggattagtt 64  Q
    |||||||||| ||| |||||||| ||||||||||| |||| || ||||| ||||| |||||    
T  47817922 atttcttaatatgtgtataaaaaacttaaacgacattcattttgaaacggagggagtagtt 47817982  T

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