View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3392_high_3 (Length: 404)
Name: NF3392_high_3
Description: NF3392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3392_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Complemental strand, 5366109 - 5365738
Alignment:
| Q |
19 |
acagctgatttcaccttcgaattaaccggaaagtgggccaacaacatcctcctcgaaacagcacgagccatagcagnnnnnnncagcactcgtttacaac |
118 |
Q |
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| T |
5366109 |
acagctgatttcaccttcgaattaaccggaaggtgggccaacaacatcctcctcgaaacagcacgagccatagcagaaaaaaacagcactcgtttacaac |
5366010 |
T |
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| Q |
119 |
aactcatgtggatgcttaacgaactaagctccccttatggtgacatagaacaaaaactagctgcatattttctccaagccttattctctcgaatgaccga |
218 |
Q |
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| T |
5366009 |
aactcatgtggatgcttaacgaactaagctccccttatggtgacatagaacaaaaactagctgcatattttctccaagccttattctctcgaatgaccga |
5365910 |
T |
|
| Q |
219 |
agccggtacccgaaccttccgaaccctagcttcagcatcagaaaaaacttgctctttcgaatcaacaagaaaaacggttctaaaattccaagaagttagt |
318 |
Q |
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| T |
5365909 |
agccggtacccgaaccttccgaaccctagcttcagcatcagaaaaaacttgctctttcgaatcaacaagaaaaacggttctaaaattccaagaagttagt |
5365810 |
T |
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| Q |
319 |
ccgtggacaaccttcggccatgtcgcatgcaatggcgccattttagaagccttcgaaggtgattccaagctg |
390 |
Q |
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| T |
5365809 |
ccgtggacaaccttcggccatgtcgcatgcaatggcgccattttagaagccttcgaaggtgattccaagctg |
5365738 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 39987321 - 39987382
Alignment:
| Q |
115 |
caacaactcatgtggatgcttaacgaactaagctccccttatggtgacatagaacaaaaact |
176 |
Q |
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| T |
39987321 |
caacaactcatgtggatgctaaacgagcttagtaccccatatggtgacacagatcaaaaact |
39987382 |
T |
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