View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3392_high_5 (Length: 391)
Name: NF3392_high_5
Description: NF3392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3392_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 10784363 - 10783983
Alignment:
| Q |
1 |
tcatcaaattatcacaagtctaaattcagcacaaattcatatttacaagattgcaatgattatccttttnnnnnnngggaaaagtaataaacatagttgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10784363 |
tcatcaaattatcacaagtctaaattcagcacaaattcatatttacaagattgcaatgattatccttttaaaaaaagggaaaagtaataaacatagttgc |
10784264 |
T |
|
| Q |
101 |
atgtctaggatttcataagtttagcagaaatcgcatggtcaagcagaattcgcaagaaaaatatactaagagcacaagcaggttaacctgtcaacgagat |
200 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10784263 |
acgtctaggatttcataagtttatcagaaatcgcatggtcaagcagaattcgcaagaaaaatatactaagagcacaagcaggttaacctgtcaacgagat |
10784164 |
T |
|
| Q |
201 |
gatctgaatccactgacattctatttaaccgtgtcatactctgctcaacagcacgcctcaatctggcattgtcttcctcaagcctgcttactctaccttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10784163 |
gatctgaatccactgacattctatttaaccgtgtcatactctgctcaacagcacgcctcaatctggcattgtcttcctcaagcctgcttactctaccttt |
10784064 |
T |
|
| Q |
301 |
ccattcagtttgtgccttctcagattgggaaagcttggccaaagtttcttcattttcggcctttgatatatctgctctctg |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10784063 |
ccattcagtttgtgccttctcagattgggaaagcttggccaaagtttcttcattttcggcctttgatatatctgctctctg |
10783983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 185 - 357
Target Start/End: Original strand, 30037383 - 30037555
Alignment:
| Q |
185 |
aacctgtcaacgagatgatctgaatccactgacattctatttaaccgtgtcatactctgctcaacagcacgcctcaatctggcattgtcttcctcaagcc |
284 |
Q |
| |
|
||||||||||| ||| ||| |||||||| ||||||||||||| |||||||||||| || |||| ||| ||||||||| | ||||| |||||||||||| |
|
|
| T |
30037383 |
aacctgtcaacaagaaaatcagaatccaccgacattctatttagccgtgtcatactttgttcaagagctcgcctcaatttagcattttcttcctcaagct |
30037482 |
T |
|
| Q |
285 |
tgcttactctacctttccattcagtttgtgccttctcagattgggaaagcttggccaaagtttcttcattttc |
357 |
Q |
| |
|
|||||||||||| | ||||||| | ||| | ||||||||||| ||||||||||| ||| ||||||| ||||| |
|
|
| T |
30037483 |
tgcttactctacttctccattctgactgtactttctcagattgagaaagcttggctaaaatttcttctttttc |
30037555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University