View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3392_high_7 (Length: 379)

Name: NF3392_high_7
Description: NF3392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3392_high_7
NF3392_high_7
[»] chr4 (7 HSPs)
chr4 (18-373)||(1600804-1601159)
chr4 (24-332)||(55908113-55908418)
chr4 (23-332)||(3438035-3438343)
chr4 (62-336)||(21833765-21834039)
chr4 (222-287)||(547520-547585)
chr4 (24-105)||(1527812-1527893)
chr4 (25-77)||(641321-641373)
[»] chr2 (1 HSPs)
chr2 (24-332)||(1037049-1037354)
[»] chr6 (6 HSPs)
chr6 (24-94)||(7993805-7993875)
chr6 (236-347)||(6588699-6588810)
chr6 (25-100)||(6588949-6589024)
chr6 (30-96)||(6596567-6596633)
chr6 (63-183)||(8913599-8913723)
chr6 (24-96)||(6432557-6432629)
[»] scaffold0262 (1 HSPs)
scaffold0262 (24-105)||(326-407)
[»] chr5 (3 HSPs)
chr5 (205-326)||(38266943-38267064)
chr5 (302-337)||(28532398-28532433)
chr5 (24-105)||(28532114-28532195)
[»] chr8 (3 HSPs)
chr8 (227-287)||(5767091-5767151)
chr8 (227-285)||(14003653-14003711)
chr8 (24-105)||(17627668-17627749)
[»] chr1 (4 HSPs)
chr1 (56-184)||(19468038-19468166)
chr1 (25-133)||(33160914-33161022)
chr1 (303-347)||(19467875-19467919)
chr1 (236-324)||(52093395-52093483)
[»] chr7 (1 HSPs)
chr7 (301-347)||(10615273-10615319)
[»] scaffold0014 (1 HSPs)
scaffold0014 (21-53)||(89164-89196)


Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 1600804 - 1601159
Alignment:
Q  18 ctcattgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1600804 ctcattgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacaaggcaacatgg 1600903  T
Q  118 cgatctttcaaaaaatcggctcttttaagaaccaaatgttggatacgttgacacttggataacaaactaactactccaatataactatagccagtgaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600904 cgatctttcaaaaaatcggctcttttaagaaccaaatgttggatacgttgacacttggataacaaactaactactccaatataactatagccagtgaaat 1601003  T
Q  218 atgcgaggtcaagcctcctcaaaggaagattttcctttgcaatagaggagagcaactgatccgagatacgccaataggacaattcaagacaagtcaaacc 317  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601004 atgcgaggtcaagcctcctcaaaggaggattttcctttgcaatagaggagagcaactgatccgagatacgccaataggacaattcaagacaagtcaaacc 1601103  T
Q  318 cttcaaactcaccaatgagtgaatgaaatgattagtaatcaaaattccatattctt 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1601104 cttcaaactcaccaatgagtgaatgaaatgattagtaatcaaaattccatattctt 1601159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 332
Target Start/End: Complemental strand, 55908418 - 55908113
Alignment:
Q  24 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatct 123  Q
    ||||||||||| ||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||   || |||| | ||||     
T  55908418 gagtgcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatca 55908319  T
Q  124 ttcaaaaaatcggctcttttaagaaccaaatgttggatacgttgacacttggataacaaactaactactccaatataactatagccagtgaaatatgcga 223  Q
    |||| |||   |||  ||| |||| |||||||||| ||||   |||||||||||||||||     || ||||| |||| ||||||| ||| ||| |  ||    
T  55908318 ttcataaacgtggcattttgaagatccaaatgttgtatac---gacacttggataacaaagagtatattccaacataattatagccggtgcaattttgga 55908222  T
Q  224 ggtcaagcctcctcaaaggaagattttcctttgcaatagaggagagcaactgatccgagatacgccaataggacaattcaagacaagtcaaacccttcaa 323  Q
    || |||| || ||||||||||||  | || ||||||||||  | ||||| | ||||||||| ||| || | ||||| | ||||||||| || || |||||    
T  55908221 ggacaagtcttctcaaaggaagacctcccattgcaatagaaaaaagcaattcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaa 55908122  T
Q  324 actcaccaa 332  Q
    |||||||||    
T  55908121 actcaccaa 55908113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 332
Target Start/End: Complemental strand, 3438343 - 3438035
Alignment:
Q  23 tgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatc 122  Q
    |||||| ||| |||||| ||| |||||||||   ||| ||||||||||||||||| |||||||||||| |||||   | ||||  | |||||||||||||    
T  3438343 tgagtgaaaataaggctaattttgtgagcatcgaacaatcactaaggtttatagacaccaaatcaccatgaaacatggacaacttgacaacatggcgatc 3438244  T
Q  123 tttcaaaaaatcggctcttttaagaaccaaatgttggatacgttgacacttggataacaaactaactactccaatataactatagccagtgaaatatgcg 222  Q
     || | ||| |  | | ||| |||| |||||||||| |||| ||||||||||||||||| |  ||  | | ||  |||||||||||| ||| |||    |    
T  3438243 atttagaaagtaag-tttttgaagatccaaatgttgtatacattgacacttggataacagagaaaagatttcagcataactatagccggtgcaattgtgg 3438145  T
Q  223 aggtcaagcctcctcaaaggaagattttcctttgcaatagaggagagcaactgatccgagatacgccaataggacaattcaagacaagtcaaacccttca 322  Q
    ||| ||||||| ||||||||||||  | |  ||||||||||||| || || | ||||| |||||   || | ||||| ||||||||||| || |||||||    
T  3438144 aggacaagccttctcaaaggaagacctccaattgcaatagaggaaagtaattcatccgggatacatgaagacgacaaatcaagacaagttaatcccttca 3438045  T
Q  323 aactcaccaa 332  Q
     |||||||||    
T  3438044 gactcaccaa 3438035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 336
Target Start/End: Complemental strand, 21834039 - 21833765
Alignment:
Q  62 cactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctttcaaaaa-atcggctcttttaagaaccaaatgttgga 160  Q
    ||||||||||||| |||| ||||||||||||||| |||  |||| || |||||||  |||| |||| ||| ||    ||||  |||| ||||||||||||    
T  21834039 cactaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatcattcagaaacatgttatcttc-aagatccaaatgttgga 21833941  T
Q  161 tacgttgacacttggataacaaactaactactccaatataactatagccagtgaaatatgcgaggtcaagcctcctcaaaggaagattttcctttgcaat 260  Q
     ||  ||||  ||||||||||||| ||  | ||||  |||||||||||| ||| | | |   ||| |||||||| | |||||||||  |||| |||||||    
T  21833940 caccatgacctttggataacaaacaaaagattccatcataactatagccggtgcattttcgaaggacaagcctcgttaaaggaagaccttcccttgcaat 21833841  T
Q  261 agaggagagcaactgatccgagatacgccaataggacaattcaagacaagtcaaacccttcaaactcaccaatgag 336  Q
    |||| |||| |||| |||| |||||  | || |   |||   ||||||||||||||||||||||||||| ||||||    
T  21833840 agagtagagtaactcatccaagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcactaatgag 21833765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 547520 - 547585
Alignment:
Q  222 gaggtcaagcctcctcaaaggaagattttcctttgcaatagaggagagcaactgatccgagatacg 287  Q
    |||| ||||| | |||||||||| |  |||| ||||||||||||||||||||  ||||||||||||    
T  547520 gaggacaagctttctcaaaggaatagcttccattgcaatagaggagagcaacatatccgagatacg 547585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 1527893 - 1527812
Alignment:
Q  24 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 105  Q
    |||||||||||||||| | | ||||||  ||  ||||| ||||| ||||||||| | |||||||| ||||||||||| ||||    
T  1527893 gagtgcaaacaaggctaaatgtgtgaggctatcacatttactaatgtttatagacaacaaatcactaagaaacgaagacaac 1527812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 641321 - 641373
Alignment:
Q  25 agtgcaaacaaggctgattctgtgagcatactacattcactaaggtttataga 77  Q
    ||||||||||||| ||||| ||||||| ||| ||| | |||||||||||||||    
T  641321 agtgcaaacaaggttgattttgtgagcttaccacaatgactaaggtttataga 641373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 24 - 332
Target Start/End: Complemental strand, 1037354 - 1037049
Alignment:
Q  24 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatct 123  Q
    ||||||||||| ||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||   || |||| | ||||     
T  1037354 gagtgcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaaacaaagacaactctgcgacatcgtgatca 1037255  T
Q  124 ttcaaaaaatcggctcttttaagaaccaaatgttggatacgttgacacttggataacaaactaactactccaatataactatagccagtgaaatatgcga 223  Q
    |||| |||   |||  ||| |||| |||||||||| ||||   |||||||||||||||||     || ||||| |||| ||||||  ||| ||| |  ||    
T  1037254 ttcataaacgtggcattttgaagatccaaatgttgtatac---gacacttggataacaaagagtatattccaacataattatagctggtgcaattttgga 1037158  T
Q  224 ggtcaagcctcctcaaaggaagattttcctttgcaatagaggagagcaactgatccgagatacgccaataggacaattcaagacaagtcaaacccttcaa 323  Q
    || |||| || ||||||||||||  | || ||||||||||  | ||||| | |||||| || ||| || | ||||| | ||||||||| || || |||||    
T  1037157 ggacaagtcttctcaaaggaagacctcccattgcaatagaaaaaagcaattcatccgaaatgcgcaaagatgacaaattaagacaagttaagccattcaa 1037058  T
Q  324 actcaccaa 332  Q
    |||||||||    
T  1037057 actcaccaa 1037049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 7993875 - 7993805
Alignment:
Q  24 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaa 94  Q
    ||||| |||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||    
T  7993875 gagtgaaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaa 7993805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 347
Target Start/End: Complemental strand, 6588810 - 6588699
Alignment:
Q  236 tcaaaggaagattttcctttgcaatagaggagagcaactgatccgagatacgccaataggacaattcaagacaagtcaaacccttcaaactcaccaatga 335  Q
    |||||||||||  || | ||||||||| | ||||||||| ||| ||||||  | ||   |||||  ||||||||||||||| ||||||||||||||||||    
T  6588810 tcaaaggaagacgtttccttgcaatagtgtagagcaactcatcggagatattcaaagcagacaaaccaagacaagtcaaactcttcaaactcaccaatga 6588711  T
Q  336 gtgaatgaaatg 347  Q
    || ||| |||||    
T  6588710 gtcaattaaatg 6588699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 6589024 - 6588949
Alignment:
Q  25 agtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaag 100  Q
    ||||||||||| ||||||||||||| | |||| || | |||||||||||  || ||||||||||||||||| ||||    
T  6589024 agtgcaaacaaagctgattctgtgatcttactgcaattactaaggtttacggacaccaaatcaccaagaaaggaag 6588949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 6596633 - 6596567
Alignment:
Q  30 aaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaac 96  Q
    ||||| |||||||||||||||| |   ||| | | ||||||||||||||||||||||||||||||||    
T  6596633 aaacacggctgattctgtgagccttgaacaatgattaaggtttatagaaaccaaatcaccaagaaac 6596567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 183
Target Start/End: Complemental strand, 8913723 - 8913599
Alignment:
Q  63 actaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctttcaaa----aaatcggctcttttaagaaccaaatgttg 158  Q
    ||||||||||||||| ||||||| |||||||||| ||| ||||  | |||||||  |||| |||| |    ||||  |  || |||||||||||||||||    
T  8913723 actaaggtttatagacaccaaattaccaagaaacaaagacaacttgacaacatgttgatcattcatatataaaataagtgctattaagaaccaaatgttg 8913624  T
Q  159 gatacgttgacacttggataacaaa 183  Q
     | || |||||||||||||||||||    
T  8913623 taaacattgacacttggataacaaa 8913599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 6432557 - 6432629
Alignment:
Q  24 gagtgcaaacaaggctgattctgtgagcata-ctacattcactaaggtttatagaaaccaaatcaccaagaaac 96  Q
    ||||| ||||| ||||||||||||||| ||| | ||| | ||||||||||||||| ||||||||| ||||||||    
T  6432557 gagtgaaaacagggctgattctgtgag-atatcgacaattactaaggtttatagacaccaaatcagcaagaaac 6432629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 326 - 407
Alignment:
Q  24 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 105  Q
    ||||||||||| || ||| | ||||||||| |||||||||||||| |||||||| |||||||| ||||||||| ||| ||||    
T  326 gagtgcaaacatggttgagtatgtgagcatgctacattcactaagatttatagacaccaaatcgccaagaaacaaagacaac 407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 205 - 326
Target Start/End: Complemental strand, 38267064 - 38266943
Alignment:
Q  205 tagccagtgaaatatgcgaggtcaagcctcctcaaaggaagattttcctttgcaatagaggagagcaactgatccgagatacgccaataggacaattcaa 304  Q
    ||||| ||| ||||| ||||| |||| ||| ||||||||||| ||| | ||||||||||||| || || ||||| |||||  ||||  ||||||| ||||    
T  38267064 tagccggtgcaatatccgaggccaaggctcgtcaaaggaagactttgcattgcaatagaggaaaggaagtgatcggagatgtgccagcaggacaaatcaa 38266965  T
Q  305 gacaagtcaaacccttcaaact 326  Q
    ||||||||||| |||| |||||    
T  38266964 gacaagtcaaagcctttaaact 38266943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 337
Target Start/End: Original strand, 28532398 - 28532433
Alignment:
Q  302 caagacaagtcaaacccttcaaactcaccaatgagt 337  Q
    ||||||||||||||||||| ||||||||||||||||    
T  28532398 caagacaagtcaaacccttgaaactcaccaatgagt 28532433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 28532114 - 28532195
Alignment:
Q  24 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 105  Q
    |||||||||||| | ||||||||| ||| ||  ||| | ||||||||| || || | |||||||||||||||||||| ||||    
T  28532114 gagtgcaaacaaagatgattctgttagcttatcacaattactaaggttgatggacatcaaatcaccaagaaacgaagacaac 28532195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 5767151 - 5767091
Alignment:
Q  227 caagcctcctcaaaggaagattttcctttgcaatagaggagagcaactgatccgagatacg 287  Q
    |||||||||||||||||||| ||||| ||||||| |||||||| || ||||| ||||||||    
T  5767151 caagcctcctcaaaggaagactttccattgcaatggaggagagaaattgatctgagatacg 5767091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 14003653 - 14003711
Alignment:
Q  227 caagcctcctcaaaggaagattttcctttgcaatagaggagagcaactgatccgagata 285  Q
    |||||||||||||||||||| ||||| ||||||| |||||||| || ||||| ||||||    
T  14003653 caagcctcctcaaaggaagactttccattgcaatggaggagaggaattgatctgagata 14003711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 17627749 - 17627668
Alignment:
Q  24 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 105  Q
    ||||| |||||||||||||||   |||||| | ||| | ||||||||||| ||| ||||||| ||||||||| |||| ||||    
T  17627749 gagtgaaaacaaggctgattcgtcgagcatccgacaataactaaggtttacagacaccaaattaccaagaaatgaagacaac 17627668  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 184
Target Start/End: Complemental strand, 19468166 - 19468038
Alignment:
Q  56 tacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctttcaaaaaatcggctcttttaagaaccaaatg 155  Q
    |||||||||||||||||||||| || ||||||||||||||| ||| ||||    |||||| | |||| ||||||||  | || | || |||| |||||||    
T  19468166 tacattcactaaggtttatagacactaaatcaccaagaaacaaagacaacttatcaacatagtgatcattcaaaaacccagcacgttgaagatccaaatg 19468067  T
Q  156 ttggatacgttgacacttggataacaaac 184  Q
    ||| | || |  |||||||||||||||||    
T  19468066 ttgcaaacctgcacacttggataacaaac 19468038  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 33160914 - 33161022
Alignment:
Q  25 agtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctt 124  Q
    |||| |||||| ||||||||||||||| | | |||| || ||||||||||||| |||||| || |||||||| |||  |||  |||||||||  |||| |    
T  33160914 agtgaaaacaatgctgattctgtgagcctccaacatccattaaggtttatagacaccaaagcagcaagaaacaaagagaactcggcaacatgttgatcat 33161013  T
Q  125 tcaaaaaat 133  Q
    ||| |||||    
T  33161014 tcagaaaat 33161022  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 19467919 - 19467875
Alignment:
Q  303 aagacaagtcaaacccttcaaactcaccaatgagtgaatgaaatg 347  Q
    |||| ||||||||||||||||||||| |||||||| ||| |||||    
T  19467919 aagagaagtcaaacccttcaaactcagcaatgagtcaataaaatg 19467875  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 324
Target Start/End: Original strand, 52093395 - 52093483
Alignment:
Q  236 tcaaaggaagattttcctttgcaatagaggagagcaactgatccgagatacgccaataggacaattcaagacaagtcaaacccttcaaa 324  Q
    |||||||||||  || || ||||| ||| |||||||| ||||| || ||||||  | | ||||| ||||||||||||||||| ||||||    
T  52093395 tcaaaggaagaccttgctctgcaagagatgagagcaaatgatctgatatacgcgcagacgacaaatcaagacaagtcaaacctttcaaa 52093483  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 10615273 - 10615319
Alignment:
Q  301 tcaagacaagtcaaacccttcaaactcaccaatgagtgaatgaaatg 347  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||||    
T  10615273 tcaagacaagtcaagcccttcaaactcaccaatgagtcaataaaatg 10615319  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 89164 - 89196
Alignment:
Q  21 attgagtgcaaacaaggctgattctgtgagcat 53  Q
    ||||||||||||||||||||| |||||||||||    
T  89164 attgagtgcaaacaaggctgagtctgtgagcat 89196  T

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