View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3392_high_8 (Length: 359)

Name: NF3392_high_8
Description: NF3392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3392_high_8
NF3392_high_8
[»] chr2 (26 HSPs)
chr2 (5-348)||(35738337-35738682)
chr2 (34-155)||(29078028-29078151)
chr2 (30-87)||(36889749-36889806)
chr2 (31-151)||(3603504-3603626)
chr2 (27-94)||(7184877-7184944)
chr2 (121-155)||(5921647-5921681)
chr2 (121-155)||(32933682-32933716)
chr2 (30-92)||(36888337-36888399)
chr2 (69-155)||(35408782-35408869)
chr2 (32-113)||(3607015-3607098)
chr2 (123-155)||(39149937-39149969)
chr2 (112-155)||(39912887-39912930)
chr2 (121-155)||(32933852-32933886)
chr2 (125-155)||(37412839-37412869)
chr2 (125-155)||(38275716-38275746)
chr2 (121-155)||(41377615-41377649)
chr2 (126-155)||(18565162-18565191)
chr2 (126-155)||(25642529-25642558)
chr2 (126-155)||(27883564-27883593)
chr2 (126-155)||(27883718-27883747)
chr2 (126-155)||(32503798-32503827)
chr2 (126-155)||(34484307-34484336)
chr2 (126-155)||(39454547-39454576)
chr2 (126-155)||(40694436-40694465)
chr2 (30-94)||(43820323-43820387)
chr2 (127-155)||(44915836-44915864)
[»] scaffold0225 (1 HSPs)
scaffold0225 (134-321)||(9887-10075)
[»] chr8 (26 HSPs)
chr8 (246-348)||(19793717-19793819)
chr8 (27-87)||(39567059-39567119)
chr8 (27-94)||(9311017-9311084)
chr8 (33-87)||(44633776-44633830)
chr8 (31-86)||(14816570-14816625)
chr8 (31-86)||(14829115-14829170)
chr8 (32-87)||(45378550-45378605)
chr8 (30-87)||(39270796-39270853)
chr8 (121-155)||(35224028-35224062)
chr8 (33-87)||(39568510-39568564)
chr8 (29-94)||(9312171-9312236)
chr8 (112-151)||(45436424-45436463)
chr8 (125-155)||(119211-119241)
chr8 (125-155)||(1825904-1825934)
chr8 (125-155)||(1860349-1860379)
chr8 (121-155)||(31230874-31230908)
chr8 (121-155)||(35223865-35223899)
chr8 (121-155)||(39240121-39240155)
chr8 (31-81)||(45377427-45377477)
chr8 (126-155)||(24456913-24456942)
chr8 (126-155)||(40094571-40094600)
chr8 (118-155)||(44255123-44255160)
chr8 (28-68)||(14819391-14819431)
chr8 (66-151)||(29769398-29769485)
chr8 (123-155)||(30568369-30568401)
chr8 (29-81)||(44632704-44632756)
[»] chr3 (32 HSPs)
chr3 (134-321)||(20963382-20963570)
chr3 (28-156)||(20184445-20184575)
chr3 (32-87)||(21815909-21815964)
chr3 (29-94)||(27688484-27688549)
chr3 (27-87)||(21817402-21817462)
chr3 (28-87)||(14859135-14859194)
chr3 (121-155)||(8846337-8846371)
chr3 (29-87)||(27695577-27695635)
chr3 (214-259)||(15790825-15790870)
chr3 (118-155)||(50819308-50819345)
chr3 (118-155)||(50856519-50856556)
chr3 (70-155)||(588411-588498)
chr3 (26-94)||(39991500-39991568)
chr3 (121-151)||(8846167-8846197)
chr3 (121-155)||(15862436-15862470)
chr3 (29-87)||(39992496-39992554)
chr3 (121-155)||(40410803-40410837)
chr3 (126-156)||(43844358-43844388)
chr3 (118-155)||(7743026-7743063)
chr3 (126-155)||(12123340-12123369)
chr3 (126-155)||(40926107-40926136)
chr3 (69-155)||(40969293-40969380)
chr3 (126-155)||(45171164-45171193)
chr3 (126-155)||(46766719-46766748)
chr3 (69-155)||(46766874-46766962)
chr3 (126-155)||(52606224-52606253)
chr3 (126-155)||(53841287-53841316)
chr3 (126-155)||(54107765-54107794)
chr3 (29-81)||(32304230-32304282)
chr3 (143-235)||(43843486-43843578)
chr3 (127-155)||(45171328-45171356)
chr3 (26-94)||(45940675-45940743)
[»] chr5 (12 HSPs)
chr5 (69-243)||(33957228-33957404)
chr5 (23-155)||(37966806-37966940)
chr5 (24-113)||(19718866-19718955)
chr5 (52-155)||(5152876-5152980)
chr5 (112-151)||(2597348-2597387)
chr5 (125-155)||(9693179-9693209)
chr5 (121-155)||(35263755-35263789)
chr5 (121-155)||(40589145-40589179)
chr5 (121-155)||(40589748-40589782)
chr5 (126-155)||(9693014-9693043)
chr5 (126-155)||(28392030-28392059)
chr5 (127-155)||(40774434-40774462)
[»] chr7 (21 HSPs)
chr7 (160-307)||(28264459-28264606)
chr7 (26-87)||(21709153-21709214)
chr7 (90-259)||(24446129-24446300)
chr7 (32-87)||(26024888-26024943)
chr7 (31-113)||(40738193-40738275)
chr7 (31-113)||(45088228-45088310)
chr7 (69-155)||(22338310-22338398)
chr7 (33-151)||(45087067-45087187)
chr7 (33-138)||(19543492-19543599)
chr7 (27-87)||(21710603-21710663)
chr7 (125-155)||(11678963-11678993)
chr7 (121-155)||(26920178-26920212)
chr7 (118-155)||(18731107-18731144)
chr7 (118-155)||(23437413-23437450)
chr7 (126-155)||(41758775-41758804)
chr7 (214-255)||(41893339-41893380)
chr7 (126-155)||(47251158-47251187)
chr7 (69-155)||(47305165-47305252)
chr7 (127-155)||(10625180-10625208)
chr7 (31-87)||(26025868-26025924)
chr7 (127-155)||(43726503-43726531)
[»] chr6 (18 HSPs)
chr6 (27-113)||(14403684-14403770)
chr6 (29-87)||(21611913-21611971)
chr6 (31-151)||(29467221-29467343)
chr6 (33-151)||(17971783-17971903)
chr6 (30-87)||(21282816-21282873)
chr6 (30-94)||(29751135-29751199)
chr6 (30-113)||(29465754-29465837)
chr6 (31-94)||(29744781-29744844)
chr6 (31-81)||(5660199-5660249)
chr6 (43-183)||(14907034-14907176)
chr6 (33-87)||(5659106-5659161)
chr6 (124-155)||(11525027-11525058)
chr6 (125-155)||(33544917-33544947)
chr6 (29-70)||(21283922-21283963)
chr6 (126-155)||(33972467-33972496)
chr6 (121-153)||(1860749-1860781)
chr6 (29-81)||(12260444-12260496)
chr6 (127-155)||(12903318-12903346)
[»] chr4 (33 HSPs)
chr4 (30-87)||(756486-756543)
chr4 (31-87)||(702652-702708)
chr4 (31-87)||(770951-771007)
chr4 (23-87)||(16038267-16038331)
chr4 (31-87)||(35060455-35060511)
chr4 (27-156)||(51645903-51646033)
chr4 (24-94)||(36220595-36220665)
chr4 (30-87)||(35055332-35055389)
chr4 (31-87)||(701633-701689)
chr4 (31-87)||(769932-769988)
chr4 (28-87)||(757501-757560)
chr4 (32-156)||(36219408-36219533)
chr4 (31-94)||(11038577-11038640)
chr4 (117-155)||(42779607-42779645)
chr4 (118-155)||(43316967-43317004)
chr4 (125-155)||(4965966-4965996)
chr4 (121-155)||(9010596-9010630)
chr4 (121-155)||(12381315-12381349)
chr4 (33-87)||(16039680-16039734)
chr4 (125-155)||(25218345-25218375)
chr4 (125-155)||(28570682-28570712)
chr4 (125-155)||(34959092-34959122)
chr4 (23-81)||(40681509-40681567)
chr4 (121-155)||(44428662-44428696)
chr4 (125-155)||(54136186-54136216)
chr4 (126-155)||(4793860-4793889)
chr4 (126-155)||(25593352-25593381)
chr4 (118-151)||(33625952-33625985)
chr4 (118-155)||(34958919-34958956)
chr4 (126-155)||(38866494-38866523)
chr4 (126-155)||(44170076-44170105)
chr4 (126-155)||(45911675-45911704)
chr4 (126-155)||(53645547-53645576)
[»] scaffold0029 (2 HSPs)
scaffold0029 (31-94)||(71824-71887)
scaffold0029 (30-94)||(70668-70732)
[»] scaffold0031 (3 HSPs)
scaffold0031 (27-87)||(123420-123480)
scaffold0031 (27-87)||(134296-134356)
scaffold0031 (30-87)||(129421-129478)
[»] chr1 (32 HSPs)
chr1 (26-110)||(6241248-6241332)
chr1 (31-87)||(51597961-51598017)
chr1 (31-79)||(51599443-51599491)
chr1 (31-81)||(16963434-16963484)
chr1 (30-151)||(6242633-6242756)
chr1 (30-81)||(16962009-16962060)
chr1 (31-94)||(46015852-46015915)
chr1 (69-155)||(3569414-3569502)
chr1 (118-155)||(27209257-27209294)
chr1 (32-87)||(50682589-50682644)
chr1 (125-155)||(10654290-10654320)
chr1 (125-155)||(22584613-22584643)
chr1 (125-155)||(24590486-24590516)
chr1 (121-155)||(30611481-30611515)
chr1 (125-155)||(42607617-42607647)
chr1 (125-155)||(50574609-50574639)
chr1 (126-155)||(29257084-29257113)
chr1 (126-155)||(32564211-32564240)
chr1 (29-94)||(33332175-33332240)
chr1 (34-87)||(33333414-33333467)
chr1 (126-155)||(37199182-37199211)
chr1 (214-259)||(39201228-39201273)
chr1 (29-94)||(46014699-46014764)
chr1 (214-255)||(46592958-46592999)
chr1 (126-155)||(46949997-46950026)
chr1 (69-155)||(51691912-51691999)
chr1 (126-155)||(51810233-51810262)
chr1 (30-94)||(15073922-15073986)
chr1 (127-155)||(19986383-19986411)
chr1 (127-155)||(32517774-32517802)
chr1 (123-155)||(34028814-34028846)
chr1 (127-155)||(40534022-40534050)
[»] scaffold0394 (1 HSPs)
scaffold0394 (28-94)||(14267-14334)
[»] scaffold0194 (1 HSPs)
scaffold0194 (30-94)||(19240-19304)
[»] scaffold0022 (1 HSPs)
scaffold0022 (112-155)||(93450-93493)
[»] scaffold0444 (1 HSPs)
scaffold0444 (121-155)||(11759-11793)
[»] scaffold0128 (1 HSPs)
scaffold0128 (121-155)||(45097-45131)
[»] scaffold0809 (1 HSPs)
scaffold0809 (126-155)||(4434-4463)
[»] scaffold0045 (2 HSPs)
scaffold0045 (127-155)||(65836-65864)
scaffold0045 (127-155)||(73168-73196)


Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 5 - 348
Target Start/End: Original strand, 35738337 - 35738682
Alignment:
Q  5 cagtatgttataattgataatatttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgt 104  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  35738337 cagtatgttataattgataatatttaggcttaattactattttcgttccttaactaattttttggtatcgctttggttccatatctaaaatttgatccat 35738436  T
Q  105 tttggtatt--aactttatctttgttacacattttggtcatttccgttagtttagtaaaaaatacattagggtttgtacaagtctcatcttgagattgac 202  Q
    |||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35738437 tttggtattttaactttatctttgttacatattttggtcatttccgttagtttagtaaaaaatacattagggtttgtacaagtctcatcttgagattgac 35738536  T
Q  203 taaaatttgtattcaacaatttctgaaaaataggaagaacaatatcaacaacaacaatgtccttgctttgtggttcaccatcagggattgtcccttcatc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35738537 taaaatttgtattcaacaatttctgaaaaataggaagaacaatatcaacaacaacaatgtccttgctttgtggttcaccatcagggattgtcccttcatc 35738636  T
Q  303 ttcttcattctctcatcacaagaattcaactacgaaatcttccttt 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  35738637 ttcttcattctctcatcacaagaattcaactacgaaatcttccttt 35738682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 155
Target Start/End: Complemental strand, 29078151 - 29078028
Alignment:
Q  34 ttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggtatt--aactttatctttgttaca 131  Q
    ||||||||||||||||| |||  |||| ||  ||  ||||| |||||| | |||  ||||||||| ||||||||||||||  || ||||||| |||||||    
T  29078151 ttaattgctattttcgtccctcaactatttaattaatatcgttttggtccaataattaaaatttgttccgttttggtattttaagtttatctctgttaca 29078052  T
Q  132 cattttggtcatttccgttagttt 155  Q
    |||||||||||||| | |||||||    
T  29078051 cattttggtcattttcattagttt 29078028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 36889806 - 36889749
Alignment:
Q  30 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    |||||||||||||||||| || |||| |||||||||||||||||| |||||| |||||    
T  36889806 aggcttaattgctattttagtcccttaactaattttttggtatcggtttggtcccata 36889749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 3603504 - 3603626
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatctttgtt 128  Q
    |||||||||| ||||||||| |||| |||| || ||| ||||||||||||| || |   ||||||||| |  |||||||||  |||| ||||||| ||||    
T  3603504 ggcttaattgttattttcgtcccttaactatttatttagtatcgctttggtcccttgattaaaatttgttatgttttggtattttaagtttatctctgtt 3603603  T
Q  129 acacattttggtcatttccgtta 151  Q
    ||| ||||| ||| |||||||||    
T  3603604 acatattttagtcctttccgtta 3603626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 7184877 - 7184944
Alignment:
Q  27 tttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 94  Q
    ||||||||||||||||||||| ||  ||| |||||||||||||||||| |||| | ||||| ||||||    
T  7184877 tttaggcttaattgctattttagtctcttaactaattttttggtatcggtttgatcccataactaaaa 7184944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 5921681 - 5921647
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||||||    
T  5921681 tctttgttacacattttggtcatttccgttagttt 5921647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 32933682 - 32933716
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||||||    
T  32933682 tctttgttacacattttggtcatttccgttagttt 32933716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 36888337 - 36888399
Alignment:
Q  30 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaa 92  Q
    |||||||||||||||||| || ||||  ||||||||||||||||| |||||| ||||| ||||    
T  36888337 aggcttaattgctattttagtcccttagctaattttttggtatcggtttggtcccataactaa 36888399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 35408869 - 35408782
Alignment:
Q  69 gtatcgctttggttccatatctaaaatttgatccgttttggtat--taactttatctttgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||| ||  |||||||||||   |||||||||  ||||||  ||| ||||||||||||||||| |||||||||||||    
T  35408869 gtatcgctttggttccttaattaaaatttgatttattttggtatcttaacttc-tctctgttacacattttggtcctttccgttagttt 35408782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 3607098 - 3607015
Alignment:
Q  32 gcttaattgctattttcgttccttcactaatttt--ttggtatcgctttggttccatatctaaaatttgatccgttttggtatt 113  Q
    |||||||||||||||||||||||| | |||||||  || ||||||||||| |||| ||  ||||||||  ||||||||| ||||    
T  3607098 gcttaattgctattttcgttccttaattaattttaattagtatcgctttgattccttaattaaaatttattccgttttgatatt 3607015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 39149937 - 39149969
Alignment:
Q  123 tttgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||||    
T  39149937 tttgttacacattttggtcatttccgttagttt 39149969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 39912930 - 39912887
Alignment:
Q  112 ttaactttatctttgttacacattttggtcatttccgttagttt 155  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||    
T  39912930 ttaactttctctctgttacaccttttggtcatttccgttagttt 39912887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 32933886 - 32933852
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||| |||||||||||||    
T  32933886 tctttgttacacattttggtcctttccgttagttt 32933852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Complemental strand, 37412869 - 37412839
Alignment:
Q  125 tgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||    
T  37412869 tgttacacattttggtcatttccgttagttt 37412839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Complemental strand, 38275746 - 38275716
Alignment:
Q  125 tgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||    
T  38275746 tgttacacattttggtcatttccgttagttt 38275716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 41377649 - 41377615
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||| |||||||||    
T  41377649 tctttgttacacattttggtcattttcgttagttt 41377615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 18565162 - 18565191
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  18565162 gttacacattttggtcatttccgttagttt 18565191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 25642558 - 25642529
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  25642558 gttacacattttggtcatttccgttagttt 25642529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 27883564 - 27883593
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  27883564 gttacacattttggtcatttccgttagttt 27883593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 27883747 - 27883718
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  27883747 gttacacattttggtcatttccgttagttt 27883718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 32503827 - 32503798
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  32503827 gttacacattttggtcatttccgttagttt 32503798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 34484336 - 34484307
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  34484336 gttacacattttggtcatttccgttagttt 34484307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 39454547 - 39454576
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  39454547 gttacacattttggtcatttccgttagttt 39454576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 40694465 - 40694436
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  40694465 gttacacattttggtcatttccgttagttt 40694436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 43820387 - 43820323
Alignment:
Q  30 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 94  Q
    |||||||| ||||||||| ||||||| |||| ||  |||||||||||||||| || || ||||||    
T  43820387 aggcttaaatgctattttggttccttaactatttaattggtatcgctttggtcccttaactaaaa 43820323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 44915836 - 44915864
Alignment:
Q  127 ttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||    
T  44915836 ttacacattttggtcatttccgttagttt 44915864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 134 - 321
Target Start/End: Original strand, 9887 - 10075
Alignment:
Q  134 ttttggtcatttccgttagtttagtaaaaaatacattagggtttgtacaagtctcatcttgagattgactaaaatttgtattcaacaatttctgaaaaat 233  Q
    |||| ||| |||||||||||||  | ||||| || ||||||||||||||||| |||| |||  |||| || ||||||||||||| ||| ||||| |||||    
T  9887 ttttagtcctttccgttagttttattaaaaaaacgttagggtttgtacaagtgtcattttgtcattggctgaaatttgtattcatcaaattctggaaaat 9986  T
Q  234 aggaagaacaatatcaacaacaacaatgtccttgctttgtggttcaccatcagggattgtcccttcatcttc-ttcattctctcatcac 321  Q
    ||||| ||||  ||||| ||||||||  ||||||||||||||||||||||||| |||  ||||||||||||| ||||||||| ||||||    
T  9987 aggaacaacaccatcaagaacaacaacttccttgctttgtggttcaccatcagtgatgttcccttcatcttctttcattctcccatcac 10075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 246 - 348
Target Start/End: Original strand, 19793717 - 19793819
Alignment:
Q  246 atcaacaacaacaatgtccttgctttgtggttcaccatcagggattgtcccttcatcttcttcattctctcatcacaagaattcaactacgaaatcttcc 345  Q
    ||||||| |||||||||||||||| |||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  19793717 atcaacagcaacaatgtccttgctgtgtggttcaccatcagtgacgttcccttcatcttcttcattctctcatcacaagaattcaacttctaaatcttcc 19793816  T
Q  346 ttt 348  Q
    |||    
T  19793817 ttt 19793819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 39567059 - 39567119
Alignment:
Q  27 tttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    |||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |||||    
T  39567059 tttaggcttaattgttattttcgtcccttaactaattttttggtatcgctttggtcccata 39567119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 9311017 - 9311084
Alignment:
Q  27 tttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 94  Q
    ||||||||||||||||||||| || ||||  |||||||||||||||||||||||| ||||| ||||||    
T  9311017 tttaggcttaattgctattttagtcccttatctaattttttggtatcgctttggtcccataactaaaa 9311084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 44633830 - 44633776
Alignment:
Q  33 cttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  44633830 cttaattgctattttggttccttaactaattttttggtatcgctttggtcccata 44633776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 14816570 - 14816625
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccat 86  Q
    ||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||    
T  14816570 ggcttaattgctattttagtcccttaactaattttttggtatcgctttggtcccat 14816625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 14829170 - 14829115
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccat 86  Q
    ||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||    
T  14829170 ggcttaattgctattttagtcccttaactaattttttggtatcgctttggtcccat 14829115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 45378605 - 45378550
Alignment:
Q  32 gcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||||||| |||||    
T  45378605 gcttaattgctattttcgtcccttaaataattttttggtatcgctttggtcccata 45378550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 39270853 - 39270796
Alignment:
Q  30 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    ||||||||||||||||||||| |||| ||| |||||||||||||| |||||| |||||    
T  39270853 aggcttaattgctattttcgtcccttaacttattttttggtatcgttttggtcccata 39270796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 35224062 - 35224028
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||||||    
T  35224062 tctttgttacacattttggtcatttccgttagttt 35224028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 39568564 - 39568510
Alignment:
Q  33 cttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    ||||||||||||||| || |||| ||||||||||| |||||| ||||||||||||    
T  39568564 cttaattgctatttttgtcccttaactaattttttagtatcgttttggttccata 39568510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 9312236 - 9312171
Alignment:
Q  29 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 94  Q
    |||| |||||||||||||| || | || ||||||||||||||||||||||| | ||||| ||||||    
T  9312236 taggtttaattgctattttagtcctttaactaattttttggtatcgctttgatcccataactaaaa 9312171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 45436463 - 45436424
Alignment:
Q  112 ttaactttatctttgttacacattttggtcatttccgtta 151  Q
    |||||||| ||| |||||||||||||||||||||||||||    
T  45436463 ttaactttctctctgttacacattttggtcatttccgtta 45436424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Original strand, 119211 - 119241
Alignment:
Q  125 tgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||    
T  119211 tgttacacattttggtcatttccgttagttt 119241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Original strand, 1825904 - 1825934
Alignment:
Q  125 tgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||    
T  1825904 tgttacacattttggtcatttccgttagttt 1825934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Original strand, 1860349 - 1860379
Alignment:
Q  125 tgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||    
T  1860349 tgttacacattttggtcatttccgttagttt 1860379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 31230908 - 31230874
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||| |||||||||||||    
T  31230908 tctttgttacacattttggtcctttccgttagttt 31230874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 35223865 - 35223899
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||| ||||    
T  35223865 tctttgttacacattttggtcatttccgtttgttt 35223899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 39240121 - 39240155
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    |||| ||||||||||||||||||||||||||||||    
T  39240121 tcttcgttacacattttggtcatttccgttagttt 39240155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 45377427 - 45377477
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggt 81  Q
    |||||||||| ||||||||| |||| | | |||||||||||||||||||||    
T  45377427 ggcttaattgttattttcgtcccttaattgattttttggtatcgctttggt 45377477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 24456942 - 24456913
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  24456942 gttacacattttggtcatttccgttagttt 24456913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 40094571 - 40094600
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  40094571 gttacacattttggtcatttccgttagttt 40094600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 44255160 - 44255123
Alignment:
Q  118 ttatctttgttacacattttggtcatttccgttagttt 155  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  44255160 ttatctctgttacacattttggtcatttacgttagttt 44255123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 14819431 - 14819391
Alignment:
Q  28 ttaggcttaattgctattttcgttccttcactaattttttg 68  Q
    |||||||||||||||||||| || |||| ||||||||||||    
T  14819431 ttaggcttaattgctattttagtcccttaactaattttttg 14819391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 29769398 - 29769485
Alignment:
Q  66 ttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatctttgttacacattttggtcatttccgtta 151  Q
    ||||| ||| ||||||||| || ||||| ||||||   |||||||   |||||||| |||||||||||  ||||||||||||||||||    
T  29769398 ttggtttcggtttggttccttaactaaattttgatttattttggtcccttaactttctctttgttacaagttttggtcatttccgtta 29769485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 30568369 - 30568401
Alignment:
Q  123 tttgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||| ||||    
T  30568369 tttgttacacattttggtcatttccgtttgttt 30568401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 44632704 - 44632756
Alignment:
Q  29 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggt 81  Q
    |||| |||||||||||||||||  ||| | |||||||||||||||| ||||||    
T  44632704 taggtttaattgctattttcgtctcttaattaattttttggtatcgttttggt 44632756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 134 - 321
Target Start/End: Complemental strand, 20963570 - 20963382
Alignment:
Q  134 ttttggtcatttccgttagtttagtaaaaaatacattagggtttgtacaagtctcatcttgagattgactaaaatttgtattcaacaatttctgaaaaat 233  Q
    |||| ||| |||||||||||||  | ||||| |  ||||| ||||||||||| |||| |||  |||| || |||||||||||||  || ||||| |||||    
T  20963570 ttttagtcctttccgttagttttattaaaaaaaagttaggatttgtacaagtgtcattttgtcattggctgaaatttgtattcataaaattctggaaaat 20963471  T
Q  234 aggaagaacaatatcaacaacaacaatgtccttgctttgtggttcaccatcagggattgtcccttcatcttc-ttcattctctcatcac 321  Q
    ||||| ||||  ||||| ||||||||  ||||||||||||||||||||||||| |||  || |||||| ||| ||||||||| ||||||    
T  20963470 aggaacaacaccatcaagaacaacaacttccttgctttgtggttcaccatcagtgatgttctcttcatattctttcattctcccatcac 20963382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 20184445 - 20184575
Alignment:
Q  28 ttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatcttt 125  Q
    ||||||||||||| |||||| || |||| |||||||||||||||||| |||||| ||||| |||||| |  |||||||||||||  |||||||||| ||     
T  20184445 ttaggcttaattgttattttagtcccttaactaattttttggtatcggtttggtcccataactaaaaataaatccgttttggtattttaactttattttc 20184544  T
Q  126 gttacacattttggtcatttccgttagttta 156  Q
      |||||||||| ||| ||||||||| ||||    
T  20184545 agtacacattttagtcctttccgttaattta 20184575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 21815909 - 21815964
Alignment:
Q  32 gcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    ||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||    
T  21815909 gcttaattgctattttcgtcccttaactaattttttagtatcgctttggttccata 21815964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 27688484 - 27688549
Alignment:
Q  29 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 94  Q
    ||||||||||||||||||| || |||| ||||||| |||||||||| |||||| ||||| ||||||    
T  27688484 taggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactaaaa 27688549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 21817462 - 21817402
Alignment:
Q  27 tttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    |||| |||||||| |||||||| | |||| ||||||||||||||||||||||||| |||||    
T  21817462 tttaagcttaattactattttcatcccttaactaattttttggtatcgctttggtcccata 21817402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 14859194 - 14859135
Alignment:
Q  28 ttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    ||||||||||||||||||||| | |||| | || |||||| |||||||||||||||||||    
T  14859194 ttaggcttaattgctattttcttcccttaaatatttttttagtatcgctttggttccata 14859135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 8846371 - 8846337
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||||||    
T  8846371 tctttgttacacattttggtcatttccgttagttt 8846337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 27695635 - 27695577
Alignment:
Q  29 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    ||||||||||||||||||| || |||| ||||||| |||||||||| |||||| |||||    
T  27695635 taggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccata 27695577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 15790825 - 15790870
Alignment:
Q  214 ttcaacaatttctgaaaaataggaagaacaatatcaacaacaacaa 259  Q
    |||| |||||||||||||||||||||||||  ||||||||||||||    
T  15790825 ttcatcaatttctgaaaaataggaagaacaccatcaacaacaacaa 15790870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 50819308 - 50819345
Alignment:
Q  118 ttatctttgttacacattttggtcatttccgttagttt 155  Q
    |||||| |||||||||||||||||||||||||||||||    
T  50819308 ttatctctgttacacattttggtcatttccgttagttt 50819345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 50856556 - 50856519
Alignment:
Q  118 ttatctttgttacacattttggtcatttccgttagttt 155  Q
    |||||| |||||||||||||||||||||||||||||||    
T  50856556 ttatctctgttacacattttggtcatttccgttagttt 50856519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 588498 - 588411
Alignment:
Q  70 tatcgctttggttccatatctaaaatttgatccgttttggtat--taactttatctttgttacacattttggtcatttccgttagttt 155  Q
    |||||||| |||||| ||  |||||||||||  ||||||||||  ||| ||| ||| ||||||||||||||||| ||| |||||||||    
T  588498 tatcgcttcggttccttaattaaaatttgatttgttttggtatcttaattttctctctgttacacattttggtcctttacgttagttt 588411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 39991500 - 39991568
Alignment:
Q  26 atttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 94  Q
    |||||| |||||||| |||||| ||||||| |||||||||||| ||||| |||| | ||||| ||||||    
T  39991500 atttagacttaattgttattttagttccttaactaattttttgatatcgttttgatcccataactaaaa 39991568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 151
Target Start/End: Original strand, 8846167 - 8846197
Alignment:
Q  121 tctttgttacacattttggtcatttccgtta 151  Q
    |||||||||||||||||||||||||||||||    
T  8846167 tctttgttacacattttggtcatttccgtta 8846197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 15862470 - 15862436
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||| |||||||||||||    
T  15862470 tctttgttacacattttggtcctttccgttagttt 15862436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 39992554 - 39992496
Alignment:
Q  29 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    ||||||||||| ||||||| || |||| ||||||||||||||||| |||| || |||||    
T  39992554 taggcttaattactattttagtcccttaactaattttttggtatcacttttgtcccata 39992496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 40410803 - 40410837
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||| ||||||||||||||    
T  40410803 tctttgttacacattttggttatttccgttagttt 40410837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 156
Target Start/End: Complemental strand, 43844388 - 43844358
Alignment:
Q  126 gttacacattttggtcatttccgttagttta 156  Q
    |||||||||||||||||||||||||||||||    
T  43844388 gttacacattttggtcatttccgttagttta 43844358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 7743063 - 7743026
Alignment:
Q  118 ttatctttgttacacattttggtcatttccgttagttt 155  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  7743063 ttatctctgttacacattttggtcctttccgttagttt 7743026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 12123369 - 12123340
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  12123369 gttacacattttggtcatttccgttagttt 12123340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 40926107 - 40926136
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  40926107 gttacacattttggtcatttccgttagttt 40926136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 40969293 - 40969380
Alignment:
Q  69 gtatcgctttggttccatatctaaaatttgatccgttttggtat--taactttatctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||| || ||  |||||||||||   |||||||||  ||||||| ||||  ||||||||||||||||||||||| |||||    
T  40969293 gtatcgctttggtcccttaattaaaatttgatttattttggtatcttaactttctcttc-ttacacattttggtcatttccgtcagttt 40969380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 45171164 - 45171193
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  45171164 gttacacattttggtcatttccgttagttt 45171193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 46766719 - 46766748
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  46766719 gttacacattttggtcatttccgttagttt 46766748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 46766962 - 46766874
Alignment:
Q  69 gtatcgctttggttccatatctaaaatttgatccgttttggtat--taactttatctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||| || ||  |||||||||||   |||| ||||  ||||||| |||  |||||||||||||||||||| |||||||||    
T  46766962 gtatcgctttggtcccttaattaaaatttgatttatttttgtatcttaactttctctccgttacacattttggtcatttacgttagttt 46766874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 52606224 - 52606253
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  52606224 gttacacattttggtcatttccgttagttt 52606253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 53841316 - 53841287
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  53841316 gttacacattttggtcatttccgttagttt 53841287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 54107765 - 54107794
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  54107765 gttacacattttggtcatttccgttagttt 54107794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 32304230 - 32304282
Alignment:
Q  29 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggt 81  Q
    |||||||||||||| ||||||| |||| | | ||| |||||||||||||||||    
T  32304230 taggcttaattgctcttttcgtcccttaagttattatttggtatcgctttggt 32304282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 43843486 - 43843578
Alignment:
Q  143 tttccgttagtttagtaaaaaatacattagggtttgtacaagtctcatcttgagattgactaaaatttgtattcaacaatttctgaaaaatag 235  Q
    ||||||| |||||| | || || || ||||||||| ||||||| |||| |||  |||||||  |||||||||||| |||||| || |||||||    
T  43843486 tttccgtcagtttaattaataaaacgttagggtttatacaagtgtcattttgtcattgactggaatttgtattcatcaatttttggaaaatag 43843578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 155
Target Start/End: Complemental strand, 45171356 - 45171328
Alignment:
Q  127 ttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||    
T  45171356 ttacacattttggtcatttccgttagttt 45171328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 45940743 - 45940675
Alignment:
Q  26 atttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 94  Q
    |||||||||||| ||||||||| || |||| |||| ||  |||||||||||||||| || || ||||||    
T  45940743 atttaggcttaaatgctattttggtcccttaactatttaattggtatcgctttggtcccttaactaaaa 45940675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 69 - 243
Target Start/End: Complemental strand, 33957404 - 33957228
Alignment:
Q  69 gtatcgctttggttccatatctaaaatttgatccgttttggtatt--aactttatctttgttacacattttggtcatttccgttagtttagtaaaaaata 166  Q
    ||||| ||||||| |||||  ||||||||  ||||||||| ||||  || |||||||  |||||| |||||||||||||||||| ||||| | ||||| |    
T  33957404 gtatcactttggtcccataattaaaatttattccgttttgatattttaagtttatctccgttacaaattttggtcatttccgttggtttaattaaaaaaa 33957305  T
Q  167 cattagggtttgtacaagtctcatcttgagattgactaaaatttgtattcaacaatttctgaaaaataggaagaaca 243  Q
      ||||||||||||||||| |||| |||   ||| |  ||||||||||||| |||||||| |||||||| |||||||    
T  33957304 agttagggtttgtacaagtgtcattttgtcgttggccgaaatttgtattcatcaatttcttaaaaatagaaagaaca 33957228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 37966806 - 37966940
Alignment:
Q  23 aatatttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaacttta 120  Q
    |||||||||||||||||| ||||||||| |||| |||| ||  || ||||  ||||||| |||||  ||||||||| ||||||||||||  |||| ||||    
T  37966806 aatatttaggcttaattgttattttcgtcccttaactatttaattagtattactttggtcccataattaaaatttgttccgttttggtattttaaattta 37966905  T
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    |||  |||||| ||||||||||||| |||||||||    
T  37966906 tctcggttacatattttggtcattttcgttagttt 37966940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 19718955 - 19718866
Alignment:
Q  24 atatttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggtatt 113  Q
    |||||||||||||||||||||||| || | || ||||||||||||||||||||||| | | ||| ||||||    |||||||||||||||    
T  19718955 atatttaggcttaattgctattttagtcctttaactaattttttggtatcgctttgatcctataactaaaaaaaaatccgttttggtatt 19718866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 5152980 - 5152876
Alignment:
Q  52 ccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggtat-taactttatctttgttacacattttggtcatttccgtt 150  Q
    |||| |||| || ||| ||||||||||||| || ||  |||||||||||   ||||||||| | | ||| ||||||||||||||||||||||||||||||    
T  5152980 ccttaactatttatttagtatcgctttggtcccttaattaaaatttgatttattttggtatcttaatttctctttgttacacattttggtcatttccgtt 5152881  T
Q  151 agttt 155  Q
     ||||    
T  5152880 ggttt 5152876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 2597387 - 2597348
Alignment:
Q  112 ttaactttatctttgttacacattttggtcatttccgtta 151  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  2597387 ttaactttctctttgttacacgttttggtcatttccgtta 2597348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Complemental strand, 9693209 - 9693179
Alignment:
Q  125 tgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||    
T  9693209 tgttacacattttggtcatttccgttagttt 9693179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 35263789 - 35263755
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||| |||||||||||||    
T  35263789 tctttgttacacattttggtcctttccgttagttt 35263755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 40589145 - 40589179
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||| ||||||||    
T  40589145 tctttgttacacattttggtcatttctgttagttt 40589179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 40589748 - 40589782
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||| ||||||||    
T  40589748 tctttgttacacattttggtcatttctgttagttt 40589782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 9693014 - 9693043
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  9693014 gttacacattttggtcatttccgttagttt 9693043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 28392059 - 28392030
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  28392059 gttacacattttggtcatttccgttagttt 28392030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 40774434 - 40774462
Alignment:
Q  127 ttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||    
T  40774434 ttacacattttggtcatttccgttagttt 40774462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 160 - 307
Target Start/End: Complemental strand, 28264606 - 28264459
Alignment:
Q  160 aaaaatacattagggtttgtacaagtctcatcttgagattgactaaaatttgtattcaacaatttctgaaaaataggaagaacaatatcaacaacaacaa 259  Q
    ||||| || ||||||||||||||| | |||| |||   ||| || ||||||||||||| ||| |||||||||||||||| || |  ||||| ||||||||    
T  28264606 aaaaaaacgttagggtttgtacaaatgtcattttgtctttggctgaaatttgtattcatcaaattctgaaaaataggaacaataccatcaagaacaacaa 28264507  T
Q  260 tgtccttgctttgtggttcaccatcagggattgtcccttcatcttctt 307  Q
      |||||||||||||||||||||| || |||  | |||||||||||||    
T  28264506 cttccttgctttgtggttcaccattagtgatgtttccttcatcttctt 28264459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 21709153 - 21709214
Alignment:
Q  26 atttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    ||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||    
T  21709153 atttaggcttaattgctattttcgtcccttaactaattttttagtatcgctttggtcccata 21709214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 259
Target Start/End: Complemental strand, 24446300 - 24446129
Alignment:
Q  90 taaaatttgatccgttttggtatt--aactttatctttgttacacattttggtcatttccgttagttt-agtaaaaaatacattagggtttgtacaagtc 186  Q
    ||||||||| |  |||||||||||  || ||||||| ||||| ||||||||||| || | |||||||| | ||||||| || ||||||||||||||| |     
T  24446300 taaaatttgttatgttttggtattttaagtttatctatgttatacattttggtcctt-cggttagttttattaaaaaaaacgttagggtttgtacaactg 24446202  T
Q  187 tcatcttgagattgactaaaatttgtattcaacaatttctgaaaaataggaagaacaatatcaacaacaacaa 259  Q
    |||| |||  ||||  |  |||||||||||| ||||||||| |||||||||| ||||  ||||||||||||||    
T  24446201 tcattttgtcattggatggaatttgtattcatcaatttctggaaaataggaaaaacaccatcaacaacaacaa 24446129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 26024888 - 26024943
Alignment:
Q  32 gcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    ||||||||||||| ||||| |||| ||| ||||||||||||||||||||| |||||    
T  26024888 gcttaattgctatcttcgtcccttaacttattttttggtatcgctttggtcccata 26024943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 40738193 - 40738275
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggtatt 113  Q
    |||||||||||||||||||| |||  |||||||  || ||||||||||||| || ||  ||||||||| || |||||||||||    
T  40738193 ggcttaattgctattttcgtccctcaactaattaattagtatcgctttggtcccttaattaaaatttgttctgttttggtatt 40738275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 45088310 - 45088228
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggtatt 113  Q
    ||||||||||||||||| || |||| ||||||| |||||||||  |||||| ||||| ||||||   | ||||||||||||||    
T  45088310 ggcttaattgctattttagtcccttaactaattgtttggtatcagtttggtcccataactaaaaaaaggtccgttttggtatt 45088228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 22338310 - 22338398
Alignment:
Q  69 gtatcgctttggttccatatctaaaatttgatccgttttggtat--taactttatctttgttacacattttggtcatttccgttagttt 155  Q
    |||| |||||||| || ||  |||||||||||   |||||||||  ||||||| | | |||||||||||||||||||||||||||||||    
T  22338310 gtattgctttggtaccttaattaaaatttgatttattttggtatcttaactttctatctgttacacattttggtcatttccgttagttt 22338398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 45087067 - 45087187
Alignment:
Q  33 cttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatctttgttac 130  Q
    |||||||| |||||| || | || |||||||||||||||||| |||||| ||||| ||||||   | ||||||||||||  ||||||||  ||  |||||    
T  45087067 cttaattgttattttagtcctttaactaattttttggtatcggtttggtcccataactaaaaaaaggtccgttttggtattttaacttttgctccgttac 45087166  T
Q  131 acattttggtcatttccgtta 151  Q
    |  |||||||| |||||||||    
T  45087167 atgttttggtcttttccgtta 45087187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 138
Target Start/End: Original strand, 19543492 - 19543599
Alignment:
Q  33 cttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatctttgttac 130  Q
    |||||||||||||||||| |||| |||| || ||| ||||||||||| | || ||  ||||||||  ||||||||| ||  |||| ||||||| ||||||    
T  19543492 cttaattgctattttcgtcccttaactatttatttagtatcgctttgatcccttaattaaaatttattccgttttgatattttaagtttatctctgttac 19543591  T
Q  131 acattttg 138  Q
    | ||||||    
T  19543592 atattttg 19543599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 21710663 - 21710603
Alignment:
Q  27 tttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    |||||||| ||||| |||||| || |||| ||| ||||||||||||||||||||| |||||    
T  21710663 tttaggctgaattgatatttttgtcccttaacttattttttggtatcgctttggtcccata 21710603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Complemental strand, 11678993 - 11678963
Alignment:
Q  125 tgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||    
T  11678993 tgttacacattttggtcatttccgttagttt 11678963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 26920212 - 26920178
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||| |||||||    
T  26920212 tctttgttacacattttggtcatttccattagttt 26920178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 18731107 - 18731144
Alignment:
Q  118 ttatctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  18731107 ttatcttcgttacacattttggtcctttccgttagttt 18731144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 23437450 - 23437413
Alignment:
Q  118 ttatctttgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||| || ||||||||||    
T  23437450 ttatctttgttacacattttggtccttcccgttagttt 23437413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 41758775 - 41758804
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  41758775 gttacacattttggtcatttccgttagttt 41758804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 41893380 - 41893339
Alignment:
Q  214 ttcaacaatttctgaaaaataggaagaacaatatcaacaaca 255  Q
    |||| |||||||||||||||||||||||||  ||||||||||    
T  41893380 ttcatcaatttctgaaaaataggaagaacaccatcaacaaca 41893339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 47251187 - 47251158
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  47251187 gttacacattttggtcatttccgttagttt 47251158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 47305165 - 47305252
Alignment:
Q  69 gtatcgctttggttccatatctaaaatttgatccgttttggtat--taactttatctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||| || ||  |||||||||||   |||||||||  |||||||||||   |||||||||||| ||||||||||||||||    
T  47305165 gtatcgctttggtcccttaattaaaatttgatttattttggtatcttaactttatctcc-ttacacattttgatcatttccgttagttt 47305252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 10625180 - 10625208
Alignment:
Q  127 ttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||    
T  10625180 ttacacattttggtcatttccgttagttt 10625208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 26025924 - 26025868
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    ||||||||||||||||| || | || |||||||| ||||||| |||||| |||||||    
T  26025924 ggcttaattgctatttttgtcctttaactaatttcttggtattgctttgattccata 26025868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 155
Target Start/End: Complemental strand, 43726531 - 43726503
Alignment:
Q  127 ttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||    
T  43726531 ttacacattttggtcatttccgttagttt 43726503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 14403684 - 14403770
Alignment:
Q  27 tttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggtatt 113  Q
    ||||||||||||||||||||| || ||||  ||||||| |||||||| ||||||| ||||| |||||||||| ||| ||||||||||    
T  14403684 tttaggcttaattgctattttagtcccttacctaatttgttggtatcactttggtcccataactaaaatttggtccattttggtatt 14403770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 21611913 - 21611971
Alignment:
Q  29 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    |||||||||||||||||||||| |||| |||||||||||||||||| |||||| |||||    
T  21611913 taggcttaattgctattttcgtcccttaactaattttttggtatcgatttggtcccata 21611971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 29467343 - 29467221
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatctttgtt 128  Q
    |||||||||||||||||||| |||| |||| || ||| |||| |||||||| |  ||  ||||||||| ||||||| | ||  |||| ||||||| ||||    
T  29467343 ggcttaattgctattttcgtcccttaactatttatttagtattgctttggtcctttaattaaaatttgttccgtttagatattttaagtttatctctgtt 29467244  T
Q  129 acacattttggtcatttccgtta 151  Q
    ||| ||||| |||||||||||||    
T  29467243 acatattttagtcatttccgtta 29467221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 151
Target Start/End: Complemental strand, 17971903 - 17971783
Alignment:
Q  33 cttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatctttgttac 130  Q
    |||||||| |||||||||||||| |||| |||  | ||||||||||||| || ||  | ||||||| ||| ||||||||  |||| |||||||  ||| |    
T  17971903 cttaattgatattttcgttccttaactattttagtagtatcgctttggtcccttaattcaaatttgttccattttggtattttaagtttatctccgttgc 17971804  T
Q  131 acattttggtcatttccgtta 151  Q
    ||||||||||| |||||||||    
T  17971803 acattttggtcctttccgtta 17971783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 21282816 - 21282873
Alignment:
Q  30 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    ||||||||||||||||||||| |||| | ||||||||| ||||||||||||| |||||    
T  21282816 aggcttaattgctattttcgtcccttaattaatttttttgtatcgctttggtcccata 21282873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 29751199 - 29751135
Alignment:
Q  30 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 94  Q
    |||||||||||||||||| || |||| ||||||| |||||||||| |||||| ||||| ||||||    
T  29751199 aggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactaaaa 29751135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 29465754 - 29465837
Alignment:
Q  30 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggtatt 113  Q
    ||||||||||||||||||||| |||| |||||||  || ||||| ||||||  || ||  ||||||||| ||||||||||||||    
T  29465754 aggcttaattgctattttcgtcccttaactaattaattagtatcactttggccccttaattaaaatttgttccgttttggtatt 29465837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 29744781 - 29744844
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 94  Q
    ||||||||||||||||| || |||| ||||||| |||||||||| |||||| ||||| ||||||    
T  29744781 ggcttaattgctattttagtcccttaactaattatttggtatcggtttggtcccataactaaaa 29744844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 5660249 - 5660199
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggt 81  Q
    |||||||||||||||||||| |||  |||||||||||||||||| ||||||    
T  5660249 ggcttaattgctattttcgtccctaaactaattttttggtatcgttttggt 5660199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 14907034 - 14907176
Alignment:
Q  43 attttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggtatt--aactttatctttgttacacattttggt 140  Q
    |||||||| | ||||||||||||||  ||| | |||||| || ||  |||||   ||||||||||||||||  ||||||||||  ||||||| ||||| |    
T  14907034 attttcgtcctttcactaatttttttatattgttttggtcccctaattaaaaaaagatccgttttggtatttaaactttatctccgttacacgttttgat 14907133  T
Q  141 catttccgtt-agtttagtaaaaaatacattagggtttgtacaa 183  Q
    |||||||||| | |||| ||||||| |  |||||||||||||||    
T  14907134 catttccgttaattttattaaaaaaca-gttagggtttgtacaa 14907176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 5659106 - 5659161
Alignment:
Q  33 cttaattgctatttt-cgttccttcactaattttttggtatcgctttggttccata 87  Q
    ||||||||||||||| ||| |||| ||||||||||||||||| ||||||| |||||    
T  5659106 cttaattgctatttttcgtcccttaactaattttttggtatcactttggtcccata 5659161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 155
Target Start/End: Complemental strand, 11525058 - 11525027
Alignment:
Q  124 ttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||||    
T  11525058 ttgttacacattttggtcatttccgttagttt 11525027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Original strand, 33544917 - 33544947
Alignment:
Q  125 tgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||    
T  33544917 tgttacacattttggtcatttccgttagttt 33544947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 21283963 - 21283922
Alignment:
Q  29 taggcttaattgctattttcgttccttcactaattttttggt 70  Q
    |||||||||||| ||||||||| |||| ||||||||||||||    
T  21283963 taggcttaattgttattttcgtcccttaactaattttttggt 21283922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 33972496 - 33972467
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  33972496 gttacacattttggtcatttccgttagttt 33972467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 1860781 - 1860749
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagt 153  Q
    |||| ||||||||||||||||||||||||||||    
T  1860781 tcttcgttacacattttggtcatttccgttagt 1860749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 12260444 - 12260496
Alignment:
Q  29 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggt 81  Q
    |||||||||||||| ||||||| |||| | | ||| |||||||||||||||||    
T  12260444 taggcttaattgctcttttcgtcccttaagttattatttggtatcgctttggt 12260496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 12903318 - 12903346
Alignment:
Q  127 ttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||    
T  12903318 ttacacattttggtcatttccgttagttt 12903346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 756486 - 756543
Alignment:
Q  30 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||    
T  756486 aggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccata 756543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 702708 - 702652
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||    
T  702708 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccata 702652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 771007 - 770951
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||    
T  771007 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccata 770951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 16038267 - 16038331
Alignment:
Q  23 aatatttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    |||| ||||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |||||    
T  16038267 aataattaggcttaattgttattttcgtcccttaactaattttttggtatcgctttggtcccata 16038331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 35060511 - 35060455
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||    
T  35060511 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttggtcccata 35060455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 51646033 - 51645903
Alignment:
Q  27 tttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatctt 124  Q
    ||||||||||||||||||||| || ||||  ||||||||||||||||| |||||| ||||| ||||||   | ||||||||||||  |||| |||||||     
T  51646033 tttaggcttaattgctattttagtcccttagctaattttttggtatcggtttggtcccataactaaaaaaag-tccgttttggtattttaagtttatctc 51645935  T
Q  125 tgttacacattttggtcatttccgttagttta 156  Q
     ||||||  |||||||| ||||||| ||||||    
T  51645934 cgttacatgttttggtcctttccgtcagttta 51645903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 36220665 - 36220595
Alignment:
Q  24 atatttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 94  Q
    |||| ||||||||||||||||||| || |||| |||||||||||||||||| |||||| ||||| ||||||    
T  36220665 atatataggcttaattgctattttagtaccttaactaattttttggtatcgttttggtcccataactaaaa 36220595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 35055332 - 35055389
Alignment:
Q  30 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||||||||||| |||||    
T  35055332 aggcttaattgttattttcgtcccttaactaattttttggtatcgctttggtcccata 35055389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 701633 - 701689
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||    
T  701633 ggcttaattgctattttcgtcccttaacttattttttggtatcgctttggtcccata 701689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 769932 - 769988
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||    
T  769932 ggcttaattgctattttcgtcccttaacttattttttggtatcgctttggtcccata 769988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 757560 - 757501
Alignment:
Q  28 ttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    ||||||||||||||||||||| | |||| ||| ||||||||||||||||||||| |||||    
T  757560 ttaggcttaattgctattttcatcccttaacttattttttggtatcgctttggtcccata 757501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 156
Target Start/End: Original strand, 36219408 - 36219533
Alignment:
Q  32 gcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatctttgtta 129  Q
    |||||||||||||||| || |||| ||||||||||  |||||| |||||| ||||| ||||||   | |||||||| |||  |||| |||||||  ||||    
T  36219408 gcttaattgctattttagtcccttaactaatttttgagtatcggtttggtcccataactaaaaaaag-tccgttttagtattttaagtttatctccgtta 36219506  T
Q  130 cacattttggtcatttccgttagttta 156  Q
    || ||||||||||||||||| ||||||    
T  36219507 catattttggtcatttccgtcagttta 36219533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 11038577 - 11038640
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 94  Q
    ||||||||||||||||| || ||||  ||||||||||||||| |||||||| ||||| ||||||    
T  11038577 ggcttaattgctattttagtcccttagctaattttttggtattgctttggtcccataactaaaa 11038640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 42779607 - 42779645
Alignment:
Q  117 tttatctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  42779607 tttatctttgttacacattttggtcttttccgttagttt 42779645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 43316967 - 43317004
Alignment:
Q  118 ttatctttgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||| |||||||||||||    
T  43316967 ttatctttgttacacattttggtcctttccgttagttt 43317004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Original strand, 4965966 - 4965996
Alignment:
Q  125 tgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||    
T  4965966 tgttacacattttggtcatttccgttagttt 4965996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 9010596 - 9010630
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||| |||||||||||||    
T  9010596 tctttgttacacattttggtcctttccgttagttt 9010630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 12381349 - 12381315
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||| |||||||||||||    
T  12381349 tctttgttacacattttggtcctttccgttagttt 12381315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 16039734 - 16039680
Alignment:
Q  33 cttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    ||||||||||||||| || |||| |||||||||||||||||| || ||| |||||    
T  16039734 cttaattgctatttttgtcccttaactaattttttggtatcgtttcggtcccata 16039680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Complemental strand, 25218375 - 25218345
Alignment:
Q  125 tgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||    
T  25218375 tgttacacattttggtcatttccgttagttt 25218345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Complemental strand, 28570712 - 28570682
Alignment:
Q  125 tgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||    
T  28570712 tgttacacattttggtcatttccgttagttt 28570682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Complemental strand, 34959122 - 34959092
Alignment:
Q  125 tgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||    
T  34959122 tgttacacattttggtcatttccgttagttt 34959092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 40681567 - 40681509
Alignment:
Q  23 aatatttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggt 81  Q
    |||| ||||||||||||||| ||||||| |||| | | ||| |||||||||||||||||    
T  40681567 aataattaggcttaattgctcttttcgtcccttaagttattatttggtatcgctttggt 40681509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 44428662 - 44428696
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||| |||||||||||||    
T  44428662 tctttgttacacattttggtcctttccgttagttt 44428696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Original strand, 54136186 - 54136216
Alignment:
Q  125 tgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||    
T  54136186 tgttacacattttggtcatttccgttagttt 54136216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 4793889 - 4793860
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  4793889 gttacacattttggtcatttccgttagttt 4793860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 25593381 - 25593352
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  25593381 gttacacattttggtcatttccgttagttt 25593352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 33625952 - 33625985
Alignment:
Q  118 ttatctttgttacacattttggtcatttccgtta 151  Q
    |||||| |||||||||||||||||||||||||||    
T  33625952 ttatctctgttacacattttggtcatttccgtta 33625985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 34958919 - 34958956
Alignment:
Q  118 ttatctttgttacacattttggtcatttccgttagttt 155  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  34958919 ttatctctgttacacaatttggtcatttccgttagttt 34958956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 38866494 - 38866523
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  38866494 gttacacattttggtcatttccgttagttt 38866523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 44170076 - 44170105
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  44170076 gttacacattttggtcatttccgttagttt 44170105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 45911675 - 45911704
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  45911675 gttacacattttggtcatttccgttagttt 45911704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 53645547 - 53645576
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  53645547 gttacacattttggtcatttccgttagttt 53645576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 71887 - 71824
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 94  Q
    ||||||||||||||||| || |||| ||||||||||||||||||||||||| ||||| ||||||    
T  71887 ggcttaattgctattttagtcccttaactaattttttggtatcgctttggtcccataactaaaa 71824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 70668 - 70732
Alignment:
Q  30 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 94  Q
    |||||||||||||||||| || |||| |||||||||||||||||| |||||| ||||| ||||||    
T  70668 aggcttaattgctattttagtcccttaactaattttttggtatcggtttggtcccataactaaaa 70732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 123420 - 123480
Alignment:
Q  27 tttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    |||||||||||||||||||||||| |||| |||||||| ||||||| |||||||| |||||    
T  123420 tttaggcttaattgctattttcgtcccttaactaatttcttggtattgctttggtcccata 123480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 134296 - 134356
Alignment:
Q  27 tttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    |||||||||||||||||||||||| |||| |||||||| ||||||| |||||||| |||||    
T  134296 tttaggcttaattgctattttcgtcccttaactaatttcttggtattgctttggtcccata 134356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 129478 - 129421
Alignment:
Q  30 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    ||||||||||| ||||||||| |||| ||| ||||||||||||| ||||||| |||||    
T  129478 aggcttaattgttattttcgtcccttaacttattttttggtatcactttggtcccata 129421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 6241248 - 6241332
Alignment:
Q  26 atttaggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggt 110  Q
    |||||||||||||| ||||||||||||||| |||| || ||| ||||||||||||| || ||  ||||||||  |||||||||||    
T  6241248 atttaggcttaatttctattttcgttccttaactatttatttagtatcgctttggtcccttaattaaaatttattccgttttggt 6241332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 51597961 - 51598017
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||    
T  51597961 ggcttaattgctattttcgtcccttaacttattttttggtatcgctttggtcccata 51598017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 51599491 - 51599443
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttg 79  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  51599491 ggcttaattgctattttcgtcccttaactaattttttggtatcgctttg 51599443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 16963484 - 16963434
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggt 81  Q
    |||||||||| |||||||||||||| |||||||||||||||||| ||||||    
T  16963484 ggcttaattgttattttcgttccttaactaattttttggtatcgatttggt 16963434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 6242756 - 6242633
Alignment:
Q  30 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaatttgatccgttttggta--ttaactttatctttgt 127  Q
    ||||||||||| ||||||| | |||| |||||||  || ||||||||||||| || ||  ||||||||| ||||||||||||  |||| || || || ||    
T  6242756 aggcttaattgatattttcatcccttaactaattaattagtatcgctttggtcccttaattaaaatttgttccgttttggtattttaatttaattttcgt 6242657  T
Q  128 tacacattttggtcatttccgtta 151  Q
    |||||| |||||||  ||||||||    
T  6242656 tacacaatttggtcccttccgtta 6242633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 16962009 - 16962060
Alignment:
Q  30 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggt 81  Q
    |||||||||||||||||| || |||| |||||||||||||||| ||||||||    
T  16962009 aggcttaattgctatttttgtcccttaactaattttttggtattgctttggt 16962060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 46015915 - 46015852
Alignment:
Q  31 ggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 94  Q
    |||||||||| |||||| || |||| | ||||||||||||||||||||||| ||||| ||||||    
T  46015915 ggcttaattgttattttagtcccttaagtaattttttggtatcgctttggtcccataactaaaa 46015852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 3569414 - 3569502
Alignment:
Q  69 gtatcgctttggttccatatctaaaatttgatccgttttggtat--taactttatctttgttacacattttggtcatttccgttagttt 155  Q
    |||||| ||||||||| ||  |||||||||||   |||||||||  ||| ||| ||| |||||||||||||||| ||||||||||||||    
T  3569414 gtatcgttttggttccttaattaaaatttgatatattttggtatcttaattttctctctgttacacattttggtaatttccgttagttt 3569502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 27209257 - 27209294
Alignment:
Q  118 ttatctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  27209257 ttatcttcgttacacattttggtcatttccgttagttt 27209294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 50682644 - 50682589
Alignment:
Q  32 gcttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    |||||||||||||||| || |||| | || |||||||||||||||||||| |||||    
T  50682644 gcttaattgctattttggtcccttaattatttttttggtatcgctttggtcccata 50682589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Complemental strand, 10654320 - 10654290
Alignment:
Q  125 tgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||    
T  10654320 tgttacacattttggtcatttccgttagttt 10654290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Complemental strand, 22584643 - 22584613
Alignment:
Q  125 tgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||    
T  22584643 tgttacacattttggtcatttccgttagttt 22584613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Complemental strand, 24590516 - 24590486
Alignment:
Q  125 tgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||    
T  24590516 tgttacacattttggtcatttccgttagttt 24590486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 30611515 - 30611481
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||| |||||||||    
T  30611515 tctttgttacacattttggtcattttcgttagttt 30611481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Original strand, 42607617 - 42607647
Alignment:
Q  125 tgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||    
T  42607617 tgttacacattttggtcatttccgttagttt 42607647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 155
Target Start/End: Original strand, 50574609 - 50574639
Alignment:
Q  125 tgttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||||    
T  50574609 tgttacacattttggtcatttccgttagttt 50574639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 29257113 - 29257084
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  29257113 gttacacattttggtcatttccgttagttt 29257084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 32564240 - 32564211
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  32564240 gttacacattttggtcatttccgttagttt 32564211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 33332175 - 33332240
Alignment:
Q  29 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 94  Q
    ||||||||||||||||||| ||  ||| |||| || |||||||||| |||||| ||||| ||||||    
T  33332175 taggcttaattgctattttagtctcttaactagttgtttggtatcggtttggtcccataactaaaa 33332240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 33333467 - 33333414
Alignment:
Q  34 ttaattgctattttcgttccttcactaattttttggtatcgctttggttccata 87  Q
    |||||||||||||| || |||| |||||||||||||||||  |||||| |||||    
T  33333467 ttaattgctattttagtcccttaactaattttttggtatcagtttggtcccata 33333414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 37199211 - 37199182
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  37199211 gttacacattttggtcatttccgttagttt 37199182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 39201228 - 39201273
Alignment:
Q  214 ttcaacaatttctgaaaaataggaagaacaatatcaacaacaacaa 259  Q
    |||| ||||||||| |||||||||||||||  ||||||||||||||    
T  39201228 ttcatcaatttctggaaaataggaagaacatcatcaacaacaacaa 39201273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 46014699 - 46014764
Alignment:
Q  29 taggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 94  Q
    ||||||||||||||||||| ||   || ||||||||||||||||||||| | | ||||| ||||||    
T  46014699 taggcttaattgctattttagtcatttaactaattttttggtatcgcttcgatcccataactaaaa 46014764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 46592958 - 46592999
Alignment:
Q  214 ttcaacaatttctgaaaaataggaagaacaatatcaacaaca 255  Q
    |||| |||||||||||||||||||||||||  ||||||||||    
T  46592958 ttcatcaatttctgaaaaataggaagaacaccatcaacaaca 46592999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 46950026 - 46949997
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  46950026 gttacacattttggtcatttccgttagttt 46949997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 51691912 - 51691999
Alignment:
Q  69 gtatcgctttggttccatatctaaaatttgatccgttttggt--attaactttatctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||| || ||  ||||||| ||||  |||||||  ||||||||  ||| | |||||||||||||||||||||||||||||    
T  51691912 gtatcgctttggtcccttaattaaaattcgatctattttggtccattaacttc-tctctattacacattttggtcatttccgttagttt 51691999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 51810233 - 51810262
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  51810233 gttacacattttggtcatttccgttagttt 51810262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 15073986 - 15073922
Alignment:
Q  30 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 94  Q
    |||||||| ||||||||| ||||||| |||| ||  |||||||||||||||| || || ||||||    
T  15073986 aggcttaaatgctattttggttccttaactatttaattggtatcgctttggtcccttaactaaaa 15073922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 155
Target Start/End: Complemental strand, 19986411 - 19986383
Alignment:
Q  127 ttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||    
T  19986411 ttacacattttggtcatttccgttagttt 19986383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 155
Target Start/End: Complemental strand, 32517802 - 32517774
Alignment:
Q  127 ttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||    
T  32517802 ttacacattttggtcatttccgttagttt 32517774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 34028814 - 34028846
Alignment:
Q  123 tttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||| |||||||||||||    
T  34028814 tttgttacacattttggtcctttccgttagttt 34028846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 40534022 - 40534050
Alignment:
Q  127 ttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||    
T  40534022 ttacacattttggtcatttccgttagttt 40534050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 14267 - 14334
Alignment:
Q  28 ttaggcttaattgctattttcgttccttcactaa-ttttttggtatcgctttggttccatatctaaaa 94  Q
    |||||||||||||||||||| || |||| ||||| ||||||||||||| |||||| ||||| ||||||    
T  14267 ttaggcttaattgctattttagtcccttaactaatttttttggtatcggtttggtcccataactaaaa 14334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 19304 - 19240
Alignment:
Q  30 aggcttaattgctattttcgttccttcactaattttttggtatcgctttggttccatatctaaaa 94  Q
    ||||||||||| || ||| ||||||| |||||||||||| ||||| |||||| ||||| ||||||    
T  19304 aggcttaattgttactttagttccttaactaattttttgatatcggtttggtcccataactaaaa 19240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 93493 - 93450
Alignment:
Q  112 ttaactttatctttgttacacattttggtcatttccgttagttt 155  Q
    |||||||| |||| ||||||||||||| ||||||||||||||||    
T  93493 ttaactttctcttcgttacacattttgatcatttccgttagttt 93450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 11759 - 11793
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||| |||||||||||||    
T  11759 tctttgttacacattttggtcctttccgttagttt 11793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 45131 - 45097
Alignment:
Q  121 tctttgttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||| |||||||||    
T  45131 tctttgttacacattttggtcattttcgttagttt 45097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 4434 - 4463
Alignment:
Q  126 gttacacattttggtcatttccgttagttt 155  Q
    ||||||||||||||||||||||||||||||    
T  4434 gttacacattttggtcatttccgttagttt 4463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 65836 - 65864
Alignment:
Q  127 ttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||    
T  65836 ttacacattttggtcatttccgttagttt 65864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 73168 - 73196
Alignment:
Q  127 ttacacattttggtcatttccgttagttt 155  Q
    |||||||||||||||||||||||||||||    
T  73168 ttacacattttggtcatttccgttagttt 73196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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