View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3392_low_1 (Length: 719)
Name: NF3392_low_1
Description: NF3392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3392_low_1 |
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| [»] chr1 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 219 - 719
Target Start/End: Original strand, 46920168 - 46920661
Alignment:
| Q |
219 |
ttataacctatgtgagttaaatcacacaaggtttataacgagcgtaagttagtttacgcaacgtgacttaagtctcgcagg-tatttttagaagtttggt |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
46920168 |
ttataacctatgtgagttaactcacacaaggtttataacgagcgtatgttaatttacgcaaagtgacttaagtctcgcagggtatttttagaagtttggt |
46920267 |
T |
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| Q |
318 |
tatgagcgaacaannnnnnnatcgagaagagcataatttctcaatttagctcctcnnnnnnnnnnnnnnnnnnnnaagttactaaaataaatatctgttg |
417 |
Q |
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| T |
46920268 |
taggagcgaacaatttttt-atcaagaagagcataatttctcaatttagctcctcctttcttcttcttcttc---aagttactaaaa---atatctgttg |
46920360 |
T |
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| Q |
418 |
aaaaacatgagaagtcaacatcgctgcatgagaactgatgcaattcgtaccaaaatccaaataaacgctcatacaccatttaaccttaacatcatcnnnn |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46920361 |
aaaaacatgagaagtcaacatcgctgcatgagaactgatgcaattcgtaccaaaatccaaataaacgctcatacaccatttaaccttaacatcatcaaaa |
46920460 |
T |
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| Q |
518 |
nnncacaatgaacatacatcctcaaaacctactaggtagtttactcgaatcagctgtttcaacacattgttccatcttaggtcgtaccatccatgcacac |
617 |
Q |
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| T |
46920461 |
aa-cacaatgaacatacatcctcaaaacctactaggttgtttactcgaatcagctgtttcaacacattgttccatcttaggtcgtaccatccatgcacac |
46920559 |
T |
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| Q |
618 |
atcattcgcacacatgtcaccccactcccatctttcctctccaaccacctcgtcaacatgtactccaaactcgaccttcttaactcagctcaacacgttc |
717 |
Q |
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| T |
46920560 |
atcattcgcacacatgtcaccccacttccatctttcctctccaaccacctcgtcaacatgtactccaaactcgaccttcttaactcagctcaacacgttc |
46920659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 46919799 - 46919979
Alignment:
| Q |
17 |
cacattgggagtaggaagtaaattcttttggatcttgatgagagattggagacatcgactaagaacaatcacacaaagaccatttgacaatatgtcttta |
116 |
Q |
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| T |
46919799 |
cacattgggagtaggaagtaaattcttttggatcttgatgagagattggagacatcgactaagaacaatcacacaaagaccatttgacaatatgtcttta |
46919898 |
T |
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| Q |
117 |
ccaaacacttttagatataaagatttttgacttgtaagtgtttcaaccttcaattttctatcaattgcgacactttgttca |
197 |
Q |
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| T |
46919899 |
ccaaacacttttagatataaagatttttgacttgtaagtgtttcaaccttcaattttctatcaattgcgacactttgttca |
46919979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 225 - 327
Target Start/End: Original strand, 46150397 - 46150501
Alignment:
| Q |
225 |
cctatgtgagttaaatcacacaaggtttataacgagcgtaagttagtttacgcaacgtgacttaagtctcgca--ggtatttttagaagtttggttatga |
322 |
Q |
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| T |
46150397 |
cctacgtgagttaattcacgcaagatttataacatgcgtgagttaactcacgcagcgtgacttaagtgacgcattggtatttttaaaagtttggttggga |
46150496 |
T |
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| Q |
323 |
gcgaa |
327 |
Q |
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| T |
46150497 |
gcgaa |
46150501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 467 - 719
Target Start/End: Original strand, 38310567 - 38310818
Alignment:
| Q |
467 |
ccaaaatccaaataaacgctcatacaccatttaaccttaacatcatcnnnnnnncacaatgaacatacatcctcaaaacctactaggtagtttactcgaa |
566 |
Q |
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| T |
38310567 |
ccaaaatccaaataaaccctcatacaccatttaaccttaacatcatcaaaaaa-cacaatgaacatacatcctcaaaacctactaggtagtttactcgaa |
38310665 |
T |
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| Q |
567 |
tcagctgtttcaacacattgttccatcttaggtcgtaccatccatgcacacatcattcgcacacatgtcaccccactcccatctttcctctccaaccacc |
666 |
Q |
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| T |
38310666 |
tcagctgtttcaacacattgttccatcttaggtcgtaccatccatgcacacatcattcgcacacatgtcaccccactcccatctttcctctccaaccacc |
38310765 |
T |
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| Q |
667 |
tcgtcaacatgtactccaaactcgaccttcttaactcagctcaacacgttctc |
719 |
Q |
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| T |
38310766 |
tcgtcaacatgtactccaaactcgaccttcttaactcagctcaacacgttctc |
38310818 |
T |
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