View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3392_low_10 (Length: 347)
Name: NF3392_low_10
Description: NF3392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3392_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 24398666 - 24398996
Alignment:
| Q |
1 |
aaaatacaaaatgaaataatggaagcaagtacaaaatggggaatgtttcaaattgtgaaccatgatattccaaatgaagttatnnnnnnnttgcaaagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
24398666 |
aaaatacaaaatgaaataatggaagcaagtacaaaatggggaatgtttcaaattgtgaaccatgatattccaaatgaagttataaaaaaattgcaaagtg |
24398765 |
T |
|
| Q |
101 |
ttggtaaagaattctttgagttaccacaagaagagaaagaggttattgctaaacctattgggtctgattcattggaagggtatggtacaaaacttgaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24398766 |
ttggtaaagaattctttgagttaccacaagaagagaaagaggttattgctaaacctattgggtctgattcattggaagggtatggtacaaaacttgaaaa |
24398865 |
T |
|
| Q |
201 |
agaggttaatgggaagaaaggttgggtagatcatttgtttcatattatatggccaccttcttccattaattaccgtttttggcctagcaaccctgcttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24398866 |
agaggttaatgggaagaaaggttgggtagatcatttgtttcatattatatggccaccttcttccattaattaccgtttttggcctaacaaccctgcttcg |
24398965 |
T |
|
| Q |
301 |
tacaggtatgtttctatttttaactttctta |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
24398966 |
tacaggtatgtttctatttttaactttctta |
24398996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 313
Target Start/End: Original strand, 24404472 - 24404784
Alignment:
| Q |
7 |
caaaatgaaataatggaagcaagtacaaaatggggaatgtttcaaattgtgaaccatgatattccaaatgaagttatnnnnnnnttgcaaagtgttggta |
106 |
Q |
| |
|
|||||||| ||||| |||||||||| | | ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
24404472 |
caaaatgagataatagaagcaagtaaagagtggggaatgtttcaaattgtgaaccatgaaattccaaatgaagttataagaaagttgcaaagtgttggta |
24404571 |
T |
|
| Q |
107 |
aagaattctttgagttaccacaagaagagaaagaggttattgctaaacc---tattgggtctga---ttcattggaagggtatggtacaaaacttgaaaa |
200 |
Q |
| |
|
|||| || ||||||||||||||||| || ||||||||| ||||||||| |||||| ||||| ||| | ||||||||||||||||| | | | || |
|
|
| T |
24404572 |
aagagttttttgagttaccacaagatgaaaaagaggtttatgctaaacctgttattggatctgatgtttcttctgaagggtatggtacaaagcatcagaa |
24404671 |
T |
|
| Q |
201 |
agaggttaatgggaagaaaggttgggtagatcatttgtttcatattatatggccaccttcttccattaattaccgtttttggcctagcaaccctgcttct |
300 |
Q |
| |
|
|||| | | |||||| | ||| ||||| || ||||| |||||||| |||||||||||||| || |||||||| ||| |||||| | |||||| |||| |
|
|
| T |
24404672 |
agagttgagtgggaaaagaggatgggtggaccatttttttcatatcatatggccaccttcatctgttaattacagttgttggccaaataaccctacttcc |
24404771 |
T |
|
| Q |
301 |
tacaggtatgttt |
313 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
24404772 |
tataggtatgttt |
24404784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 307
Target Start/End: Original strand, 32769895 - 32769988
Alignment:
| Q |
214 |
aagaaaggttgggtagatcatttgtttcatattatatggccaccttcttccattaattaccgtttttggcctagcaaccctgcttcttacaggt |
307 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| |||||||||||||| ||||| || || |||||||||| || ||| |||||||||||| |
|
|
| T |
32769895 |
aagagaggttgggttgatcatttgtttcataagatatggccaccttcggatattaactatcgattttggcctaaaaatcctccttcttacaggt |
32769988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University