View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3392_low_12 (Length: 332)

Name: NF3392_low_12
Description: NF3392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3392_low_12
NF3392_low_12
[»] chr1 (1 HSPs)
chr1 (170-315)||(4382767-4382912)
[»] chr2 (3 HSPs)
chr2 (204-315)||(362208-362319)
chr2 (9-107)||(363163-363261)
chr2 (101-207)||(363097-363202)
[»] chr7 (3 HSPs)
chr7 (14-70)||(11683372-11683428)
chr7 (14-70)||(19710579-19710635)
chr7 (94-125)||(48455325-48455356)
[»] chr8 (6 HSPs)
chr8 (17-70)||(11031930-11031983)
chr8 (17-70)||(10269051-10269104)
chr8 (68-123)||(10268522-10268577)
chr8 (9-62)||(38884540-38884593)
chr8 (9-70)||(9186146-9186208)
chr8 (68-125)||(11032457-11032514)
[»] chr5 (1 HSPs)
chr5 (9-70)||(24497589-24497650)
[»] chr6 (1 HSPs)
chr6 (7-70)||(31209966-31210029)
[»] chr4 (3 HSPs)
chr4 (7-70)||(230961-231024)
chr4 (9-70)||(39294397-39294458)
chr4 (14-62)||(9590682-9590730)
[»] chr3 (3 HSPs)
chr3 (9-62)||(7589613-7589666)
chr3 (9-62)||(17260477-17260530)
chr3 (14-62)||(35862751-35862799)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 170 - 315
Target Start/End: Original strand, 4382767 - 4382912
Alignment:
Q  170 aaggtgacatagatgatggaaaaataagtagcattaagatatacgtactcatatttctcaagtttgaagcttaaatgtactagtatgataaacatagtaa 269  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  4382767 aaggtgacatagatgggggaaaaataagtagcattaatatatacgtactcatatttcttaagtttgaagcttaaatgtaccagtatgataaacatagtaa 4382866  T
Q  270 tttaatcaaaggagaaggcatgcgtccatgttgtttctttttcttg 315  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  4382867 tttaatcaaaggagaaggcatgtgtccatgttgtttctttttcttg 4382912  T

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Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 204 - 315
Target Start/End: Complemental strand, 362319 - 362208
Alignment:
Q  204 taagatatacgtactcatatttctcaagtttgaagcttaaatgtactagtatgataaacatagtaatttaatcaaaggagaaggcatgcgtccatgttgt 303  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||    
T  362319 taagatatacgtactcatatttctcgagtttgaagcttaaatctactagtatgataaacataataatttaatcaaaggagaaagcatgtgtccatgttgt 362220  T
Q  304 ttctttttcttg 315  Q
    ||||||||||||    
T  362219 ttctttttcttg 362208  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 363261 - 363163
Alignment:
Q  9 gaagaatatatgtgcagaacaaaataaaaaagtcagaagacacaacttgatcctgaaatatttccatcactttctgcatttcttagcacaacatttcca 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  363261 gaagcatatatgtgcagaacaaaataaaaaagtcagaagacacaacttgatcctgaaatatttccatcactttctgcatttcctaatacaacatttcca 363163  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 207
Target Start/End: Complemental strand, 363202 - 363097
Alignment:
Q  101 atttccaacattttctgcatttcttaatacaacatttccagcaacaacattttatgcannnnnnnnngaaaggtgacatagatgatggaaaaataagtag 200  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||||||||| ||||         |||| ||||||||||||||||||||||||||||    
T  363202 atttccatcactttctgcatttcctaatacaacatttccagcaacaacattttctgcattttcttttgaaa-gtgacatagatgatggaaaaataagtag 363104  T
Q  201 cattaag 207  Q
    |||||||    
T  363103 cattaag 363097  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 11683428 - 11683372
Alignment:
Q  14 atatatgtgcagaacaaaataaaaaagtcagaagacacaacttgatcctgaaatatt 70  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  11683428 atatatgtgcagaacaaagtaaaaaagtcagaagacacaacttgatcctaaaatatt 11683372  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 19710635 - 19710579
Alignment:
Q  14 atatatgtgcagaacaaaataaaaaagtcagaagacacaacttgatcctgaaatatt 70  Q
    |||||||||||||||||  ||||||||||||||||||  |||| ||| |||||||||    
T  19710635 atatatgtgcagaacaacgtaaaaaagtcagaagacatgacttaatcttgaaatatt 19710579  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 125
Target Start/End: Complemental strand, 48455356 - 48455325
Alignment:
Q  94 gcacaacatttccaacattttctgcatttctt 125  Q
    ||||||||||||||||||||||||||||||||    
T  48455356 gcacaacatttccaacattttctgcatttctt 48455325  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 11031930 - 11031983
Alignment:
Q  17 tatgtgcagaacaaaataaaaaagtcagaagacacaacttgatcctgaaatatt 70  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  11031930 tatgtgcataacaaagtaaaaaagtcagaagacacaacttgatcctgaaatatt 11031983  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 10269104 - 10269051
Alignment:
Q  17 tatgtgcagaacaaaataaaaaagtcagaagacacaacttgatcctgaaatatt 70  Q
    |||||||| |||||| ||||||||||| ||||||||||||||||||||||||||    
T  10269104 tatgtgcataacaaagtaaaaaagtcacaagacacaacttgatcctgaaatatt 10269051  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 10268577 - 10268522
Alignment:
Q  68 atttccatcactttctgcatttcttagcacaacatttccaacattttctgcatttc 123  Q
    ||||||| ||||||||| |||| || ||||||||||||||||||||||||||||||    
T  10268577 atttccagcactttctgtattttttggcacaacatttccaacattttctgcatttc 10268522  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 38884593 - 38884540
Alignment:
Q  9 gaagaatatatgtgcagaacaaaataaaaaagtcagaagacacaacttgatcct 62  Q
    |||| ||||||||||||| |||| |||||||||||||||||||||||| |||||    
T  38884593 gaagtatatatgtgcagaccaaagtaaaaaagtcagaagacacaacttcatcct 38884540  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 9186208 - 9186146
Alignment:
Q  9 gaagaatatatgtgcagaacaaaataaaaaagt-cagaagacacaacttgatcctgaaatatt 70  Q
    |||| |||||||||||||||||| ||||||| | |||||| |||||||||||||| |||||||    
T  9186208 gaagcatatatgtgcagaacaaagtaaaaaaattcagaagtcacaacttgatcctaaaatatt 9186146  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 11032457 - 11032514
Alignment:
Q  68 atttccatcactttctgcatttcttagcacaacatttccaacattttctgcatttctt 125  Q
    ||||||| ||| ||||| ||||  | ||||||||||||||||||||||||||||||||    
T  11032457 atttccagcaccttctgtattttctggcacaacatttccaacattttctgcatttctt 11032514  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 24497650 - 24497589
Alignment:
Q  9 gaagaatatatgtgcagaacaaaataaaaaagtcagaagacacaacttgatcctgaaatatt 70  Q
    |||| |||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||    
T  24497650 gaagcatatatgtgcagaagaaagtaaaaaagttagaagacacaacttgatcctgaaatatt 24497589  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 31210029 - 31209966
Alignment:
Q  7 tcgaagaatatatgtgcagaacaaaataaaaaagtcagaagacacaacttgatcctgaaatatt 70  Q
    |||||| |||||| || |||||||| ||||||||||||| ||||||||||||||||||||||||    
T  31210029 tcgaagcatatatatgtagaacaaagtaaaaaagtcagatgacacaacttgatcctgaaatatt 31209966  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 230961 - 231024
Alignment:
Q  7 tcgaagaatatatgtgcagaacaaaataaaaaagtcagaagacacaacttgatcctgaaatatt 70  Q
    |||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||| |||||||    
T  230961 tcgaagcatatatgtgcaaaacaatataaaaaattcagaagacacaacttgatccttaaatatt 231024  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 39294458 - 39294397
Alignment:
Q  9 gaagaatatatgtgcagaacaaaataaaaaagtcagaagacacaacttgatcctgaaatatt 70  Q
    |||| ||||||||||| ||||   |||||| ||||||||||||||||||||||| |||||||    
T  39294458 gaagcatatatgtgcataacattgtaaaaatgtcagaagacacaacttgatcctaaaatatt 39294397  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 9590682 - 9590730
Alignment:
Q  14 atatatgtgcagaacaaaataaaaaagtcagaagacacaacttgatcct 62  Q
    |||||||||||||||||| |||||||||||||| || |||||| |||||    
T  9590682 atatatgtgcagaacaaagtaaaaaagtcagaaaacgcaacttcatcct 9590730  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 7589613 - 7589666
Alignment:
Q  9 gaagaatatatgtgcagaacaaaataaaaaagtcagaagacacaacttgatcct 62  Q
    |||| |||||||||||||||||| ||||||| |||||||||||||||| |||||    
T  7589613 gaaggatatatgtgcagaacaaattaaaaaattcagaagacacaacttcatcct 7589666  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 17260530 - 17260477
Alignment:
Q  9 gaagaatatatgtgcagaacaaaataaaaaagtcagaagacacaacttgatcct 62  Q
    |||| ||||||||| |||||||| |||||||||||||| ||||||||| |||||    
T  17260530 gaagcatatatgtgtagaacaaagtaaaaaagtcagaacacacaacttcatcct 17260477  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 35862751 - 35862799
Alignment:
Q  14 atatatgtgcagaacaaaataaaaaagtcagaagacacaacttgatcct 62  Q
    |||||||||||||||||| ||||||||| |  |||||||| ||||||||    
T  35862751 atatatgtgcagaacaaagtaaaaaagtaaagagacacaatttgatcct 35862799  T

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