View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3392_low_17 (Length: 256)
Name: NF3392_low_17
Description: NF3392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3392_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 39577893 - 39577689
Alignment:
| Q |
42 |
cacaagcatcttatgattaatattagaaaattgaaggcaattgaaggcattggttcaattaagaagaaataacactttcatatatcacgctgtgatgcaa |
141 |
Q |
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| T |
39577893 |
cacaagcatcttatgattaatattagaaaattgaaggcaattgaaggcattggttcaattaagaagaaataacactttcatatatcacgctgtgatgcaa |
39577794 |
T |
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| Q |
142 |
taaataaaatggaacttaatgtttaccttttcttaagcaacacaaagcttcctatctgaatctcttatccaaacagtagtgtgaccagaatacagtaact |
241 |
Q |
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| T |
39577793 |
taaataaaatggaacttaatgtttaccttttcttaagcaacacaaagcttcctatctgaatctcttatccaaacagtagtatgaccagaatacagtaact |
39577694 |
T |
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| Q |
242 |
tcatc |
246 |
Q |
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||||| |
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| T |
39577693 |
tcatc |
39577689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 39541720 - 39541666
Alignment:
| Q |
163 |
tttaccttttcttaagcaacacaaagcttcctatctgaatctcttatccaaacag |
217 |
Q |
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| T |
39541720 |
tttaccttttcataagcaacacagagcttcctatctgaatctcttaagcaaacag |
39541666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 111
Target Start/End: Complemental strand, 39541778 - 39541747
Alignment:
| Q |
80 |
aattgaaggcattggttcaattaagaagaaat |
111 |
Q |
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| T |
39541778 |
aattgaaggcattggttcaattaagaagaaat |
39541747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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