View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3392_low_2 (Length: 432)
Name: NF3392_low_2
Description: NF3392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3392_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 38465929 - 38465504
Alignment:
| Q |
1 |
tttttagattttacacaatatttatataatgcactatattattgcttgttgctagttctgaatagtatagtattagaaccgcagcaacccacaaaaagga |
100 |
Q |
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| T |
38465929 |
tttttagattttacacaatatttatataatgcactatattattgcttgttgctagttctgaatagtatagtattagaaccgca---acccacaaaaagga |
38465833 |
T |
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| Q |
101 |
taattctatttgttaaataaaagaataaataaatattctattatccaaacaaaacgatagaacagaatatggaacatgaagtttgtgtgaatatgctatt |
200 |
Q |
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| T |
38465832 |
taattctatttgttaaataaaagaataaataaatattctattatccaaacaaaatgatagaacagaatatggaacatgaagtttgtgtgaatatgctatt |
38465733 |
T |
|
| Q |
201 |
catgcacttcttgtttcttatatgcctctcttacttcattatcctcttattaacaacattttaaaacaactacaattcatttcattgcatataaattagt |
300 |
Q |
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| T |
38465732 |
catgcacttattgtttcttatatgcctctcttacttcattatcctcttattgacaacattttaaaacaactacaattcatttcattgcatataaattagt |
38465633 |
T |
|
| Q |
301 |
gtcacatg-aactcaaaacaacattcacaaatggaaactaatgttttcaggcagaacagaatttcaacacaaactt---caactcactacaacctcatca |
396 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
38465632 |
gtcacatgaaactcaaaacaacattcacaaatggaaactaatgttttcaggcagaacagaatttcaacactaacttcaacaactcactacaacctcatca |
38465533 |
T |
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| Q |
397 |
aacatccaccttctatagtttctgtgctc |
425 |
Q |
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| T |
38465532 |
aacatccaccttctatagtttctgtgctc |
38465504 |
T |
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