View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3392_low_4 (Length: 392)
Name: NF3392_low_4
Description: NF3392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3392_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 3282889 - 3282530
Alignment:
| Q |
19 |
ctcatagagtctattgataatttagatcttgtatgttgcagatactcagcacaacatctagtcagtgatagagtgtcatcactttgaggtggtggaagaa |
118 |
Q |
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| T |
3282889 |
ctcatagagtctattgataatttagatcttgtatgttgcagatactcagcacaacatctagtcagtgatagagtgtcatcactttgaggtggtggaagaa |
3282790 |
T |
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| Q |
119 |
gtaatcaatttgaacttgattatcgctagaccaaatctgaatattttgattttgatgatgagatccaatgcgaattcttcaatatgaaaagaaatttaac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
3282789 |
gtaatcaatttgaacttgattatcgctagaccaaatctgaatattttgattttgatgatgagatccaatgcaaatttttcaatatgaaaagaaatttaac |
3282690 |
T |
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| Q |
219 |
aatcgatccctctccataaacctccnnnnnnnagaaggnnnnnnnncttggttcagtggttttataatttgaaatttttaaatgtaaaatctaacttcag |
318 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3282689 |
aatcgatccctctccataaacctcctttttttagaaggaaaaaaaacttggttcagtggttttataatttgaaatttttaaatgtaaaatctaacttcag |
3282590 |
T |
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| Q |
319 |
ttttgagtattgaattttaggtttgagatttaattgtatatttgagttaggtcactctat |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3282589 |
ttttgagtattgaattttaggtttgagatttaattgtatatttgagttaggtcactctat |
3282530 |
T |
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