View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3392_low_6 (Length: 385)
Name: NF3392_low_6
Description: NF3392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3392_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 129 - 371
Target Start/End: Complemental strand, 1568318 - 1568076
Alignment:
| Q |
129 |
cttcatgattgaaaaattgatttctcacaaacccatacgaagaaatcacatgctatcaattgtataatcatcaaaatcaaaactttcaccaaaatcatga |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1568318 |
cttcatgattgaaaaattgatttctcacaaacccatacgaagaaatcacatgctatcaattgtataatcatcaaaatcaaaactttcaccaaaatcatga |
1568219 |
T |
|
| Q |
229 |
ataacatcaaataaacattacatgtttatgcaacaaaaataatgcacaaatcaatgaaacaaaagcaacaacttcatggtcaaataaaatagcataaacc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||| |
|
|
| T |
1568218 |
ataacatcaaataaacattacatgtttatgcaacaaaaataatgcacaaatcaatgaaacaaaagcaacaccttcatgatcaaataaaacagcataaacc |
1568119 |
T |
|
| Q |
329 |
catgtgaagaaattgcataaaatcatcaaaattgtgcaaattt |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1568118 |
catgtgaagaaattgcataaaatcatcaaaattgtgcaaattt |
1568076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 1568418 - 1568361
Alignment:
| Q |
159 |
acccatacgaagaaatcacatgctatcaattgtataatcatcaaaatcaaaactttca |
216 |
Q |
| |
|
||||||| |||||||| ||||| | ||||| || ||||||||||||||||||||||| |
|
|
| T |
1568418 |
acccatatgaagaaattgcatgcaaacaattataaaatcatcaaaatcaaaactttca |
1568361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 1568443 - 1568407
Alignment:
| Q |
4 |
tcgaagaatatcaatataatcatagacccatatgaag |
40 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||| |
|
|
| T |
1568443 |
tcgaaaaaaatcaatataatcatagacccatatgaag |
1568407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 18746183 - 18746276
Alignment:
| Q |
129 |
cttcatgattgaaaaattgatttctcacaaacccatacgaagaaatcacatgctatcaattgtataatcatcaaaatcaaaactttcaccaaaa |
222 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18746183 |
cttcatgatcgaaaaattgttttctcacaaacccatatgaagaaatcacatgctatcaattgtataatcatcaaaatcaaaactttcaccaaaa |
18746276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 362
Target Start/End: Original strand, 574514 - 574566
Alignment:
| Q |
310 |
aaataaaatagcataaacccatgtgaagaaattgcataaaatcatcaaaattg |
362 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
574514 |
aaataacacagcataaacccatgtgaagaaattgcataaaatcatcgaaattg |
574566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University