View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3393_high_10 (Length: 282)

Name: NF3393_high_10
Description: NF3393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3393_high_10
NF3393_high_10
[»] chr1 (10 HSPs)
chr1 (77-266)||(30698513-30698702)
chr1 (77-266)||(30689627-30689816)
chr1 (77-265)||(30718670-30718858)
chr1 (77-266)||(30710396-30710585)
chr1 (77-259)||(30656571-30656753)
chr1 (77-265)||(30671732-30671920)
chr1 (164-242)||(16252066-16252144)
chr1 (164-241)||(33042601-33042678)
chr1 (183-238)||(30623894-30623949)
chr1 (230-266)||(15815181-15815217)
[»] chr4 (1 HSPs)
chr4 (92-259)||(56539165-56539332)
[»] chr2 (2 HSPs)
chr2 (180-238)||(4420146-4420204)
chr2 (187-229)||(38337632-38337674)
[»] chr7 (1 HSPs)
chr7 (183-231)||(38830756-38830804)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 77 - 266
Target Start/End: Original strand, 30698513 - 30698702
Alignment:
Q  77 aggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttgaacagaaaaattgaggacagcattattacctctcattgag 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  30698513 aggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacagcattattacctctcattgag 30698612  T
Q  177 aatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtatctctg 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  30698613 aatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaactcttcttcctcctcttgttgtatctctg 30698702  T

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Target: chr1; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 77 - 266
Target Start/End: Original strand, 30689627 - 30689816
Alignment:
Q  77 aggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttgaacagaaaaattgaggacagcattattacctctcattgag 176  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| || ||||||||||||     
T  30689627 aggtgaagacccttctctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacagcatcataacctctcattgaa 30689726  T
Q  177 aatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtatctctg 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30689727 aatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtgtctctg 30689816  T

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Target: chr1; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 77 - 265
Target Start/End: Original strand, 30718670 - 30718858
Alignment:
Q  77 aggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttgaacagaaaaattgaggacagcattattacctctcattgag 176  Q
    ||||||||| |||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||| || ||||||||||||     
T  30718670 aggtgaagacccttctctgcaatcatattgaatcgcttgcaaagattctttgaccctttgaacagaaaaattgagcacagcatcataacctctcattgaa 30718769  T
Q  177 aatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtatctct 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30718770 aatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtatctct 30718858  T

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Target: chr1; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 77 - 266
Target Start/End: Original strand, 30710396 - 30710585
Alignment:
Q  77 aggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgac-cttttgaacagaaaaattgaggacagcattattacctctcattga 175  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||||||    
T  30710396 aggtgaagacccttttctgcaatcatattgaatctcttgcaaagattctttgacgctttcgaa-agaaaaattgaggaaagcattattacctctcattga 30710494  T
Q  176 gaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtatctctg 266  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30710495 aaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaacccttcttcctcctcttgttgtatctctg 30710585  T

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Target: chr1; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 77 - 259
Target Start/End: Original strand, 30656571 - 30656753
Alignment:
Q  77 aggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttgaacagaaaaattgaggacagcattattacctctcattgag 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||     
T  30656571 aggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacagcattattacctctcattgaa 30656670  T
Q  177 aatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgt 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | || || ||||||||    
T  30656671 aatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctaaccaaacccttttgccaccccttgttgt 30656753  T

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Target: chr1; HSP #6
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 77 - 265
Target Start/End: Original strand, 30671732 - 30671920
Alignment:
Q  77 aggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttgaacagaaaaattgaggacagcattattacctctcattgag 176  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||     
T  30671732 aggtgaagacccttctctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacggcattattacctctcattgaa 30671831  T
Q  177 aatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtatctct 265  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | || || |||||||| |||||    
T  30671832 aatgcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaacccttttaccaccccttgttgtgtctct 30671920  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 242
Target Start/End: Original strand, 16252066 - 16252144
Alignment:
Q  164 acctctcattgagaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaaccctt 242  Q
    |||||||||||| || |||||||||||||||||||  || ||  |||||||||||||||||||||| | ||| ||||||    
T  16252066 acctctcattgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttcctaaccataccctt 16252144  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 33042678 - 33042601
Alignment:
Q  164 acctctcattgagaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaaccct 241  Q
    ||||||||| || || || |||||||||||||| ||||||||| |||| ||||||||||| ||||| ||||| |||||    
T  33042678 acctctcatggaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagccacaccct 33042601  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 30623894 - 30623949
Alignment:
Q  183 gcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaac 238  Q
    |||||||||||||||||||||||| |||||||  |||||||||| |||| ||||||    
T  30623894 gcttgatcataagctaaagcagcagcttcagctgtatcaaatgtaccaatccaaac 30623949  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 15815217 - 15815181
Alignment:
Q  230 aagccaaacccttcttcctcctcttgttgtatctctg 266  Q
    |||||||||||||||||||||||||| ||||||||||    
T  15815217 aagccaaacccttcttcctcctcttgctgtatctctg 15815181  T

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Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 92 - 259
Target Start/End: Complemental strand, 56539332 - 56539165
Alignment:
Q  92 tctgcaatcatattgaatctcttgcaaagattctttgaccttttgaacagaaaaattgaggacagcattattacctctcattgagaatgcagcttgatca 191  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| ||| ||||||||||||||| ||| ||||||||||||||     
T  56539332 tctgcaatcatattgaatctcttgcaaatatcctttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaaaatgcagcttgatcg 56539233  T
Q  192 taagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgt 259  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||  |||||||||    
T  56539232 taagctaaagcagcatcctcagcactgtcaaatgttccaagccaaacacttcttccttttcttgttgt 56539165  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 4420146 - 4420204
Alignment:
Q  180 gcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaac 238  Q
    ||||||| |||||||||||||||||| | ||||||  |||||||||| |||||||||||    
T  4420146 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaac 4420204  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 38337674 - 38337632
Alignment:
Q  187 gatcataagctaaagcagcatcttcagcactatcaaatgttcc 229  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||    
T  38337674 gatcataggctaaagcagcatcttctgcagtatcaaatgttcc 38337632  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 38830804 - 38830756
Alignment:
Q  183 gcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaa 231  Q
    ||||| |||||||||||||||||  |||||||  |||||||||||||||    
T  38830804 gcttggtcataagctaaagcagctgcttcagctgtatcaaatgttccaa 38830756  T

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