View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3393_high_12 (Length: 270)
Name: NF3393_high_12
Description: NF3393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3393_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 30055401 - 30055121
Alignment:
| Q |
1 |
tgctactctcgatcgattttactctgtagcaatgattcttgttccacacaaacccaaaaggaagaagaagagaactgaaaagaagacaga---------- |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30055401 |
tgctactctcgatcgattttactctgtagcaatgattcttgttccacacaaacccaaaaggaagaagaagagaactgaaaagaagacagactcagcaatt |
30055302 |
T |
|
| Q |
91 |
------------ttatccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagca |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30055301 |
taccagattccattatccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagca |
30055202 |
T |
|
| Q |
179 |
tcttccaacccttagattaacttccaaacccttcaactccatccacactttcaccgaatcactctctcgaatcctgtctct |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30055201 |
tcttccaacccttagattaacttccaaacccttcaactccatccacactttcaccgaatcactctctcgaatcctgtctct |
30055121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 185
Target Start/End: Complemental strand, 8400584 - 8400489
Alignment:
| Q |
90 |
attatccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttcca |
185 |
Q |
| |
|
||||||||| |||||||||| |||||||| || ||||||| |||||||||||| |||||||||||||||||| | |||||||||| ||||||||| |
|
|
| T |
8400584 |
attatccatcacattctctccttcttgaaaaccaaagaagtttttcaaacttgtgtactctcaacaagatggatccatctcacaaaacatcttcca |
8400489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 5367622 - 5367737
Alignment:
| Q |
89 |
gattatccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttccaacc |
188 |
Q |
| |
|
|||| ||||| |||||||||| || || |||| ||| ||||||||||||||| ||||||||| || |||||||| ||||| |||| ||||| |||||| |
|
|
| T |
5367622 |
gattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatctaccaacc |
5367721 |
T |
|
| Q |
189 |
cttagattaacttcca |
204 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
5367722 |
cttagattaagttcca |
5367737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 5362411 - 5362521
Alignment:
| Q |
94 |
tccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttccaacccttag |
193 |
Q |
| |
|
||||| |||||||||| || ||| |||| ||||||||||||||||||||||||||||| | | ||||||| |||| |||| ||| ||||||| ||||| |
|
|
| T |
5362411 |
tccatcacattctctccttattggacaccaaagaagcttttcaaacttgcatactctccaaacgatggaagaatctaccaaaccatattccaactcttag |
5362510 |
T |
|
| Q |
194 |
attaacttcca |
204 |
Q |
| |
|
||||| ||||| |
|
|
| T |
5362511 |
attaagttcca |
5362521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 198
Target Start/End: Original strand, 5374181 - 5374285
Alignment:
| Q |
94 |
tccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttccaacccttag |
193 |
Q |
| |
|
||||| |||||||||| || || |||| ||| ||||||||||||||| ||||||||| || |||||||| ||||| |||| ||| ||||||||||||| |
|
|
| T |
5374181 |
tccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattccaacccttag |
5374280 |
T |
|
| Q |
194 |
attaa |
198 |
Q |
| |
|
||||| |
|
|
| T |
5374281 |
attaa |
5374285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 5355979 - 5356089
Alignment:
| Q |
94 |
tccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttccaacccttag |
193 |
Q |
| |
|
||||| |||||||||| || || |||| ||| ||||||||||||||| ||||||||| || |||||||| ||||| |||| ||||| |||||||||| |
|
|
| T |
5355979 |
tccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaacatctctcaacccttag |
5356078 |
T |
|
| Q |
194 |
attaacttcca |
204 |
Q |
| |
|
||||| ||||| |
|
|
| T |
5356079 |
attaagttcca |
5356089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 8400695 - 8400655
Alignment:
| Q |
23 |
tctgtagcaatgattcttgttccacacaaacccaaaaggaa |
63 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8400695 |
tctgcagcaatgattcttcttccacacaaacccaaaaggaa |
8400655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University