View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3393_high_3 (Length: 649)
Name: NF3393_high_3
Description: NF3393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3393_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 329 - 633
Target Start/End: Original strand, 35447991 - 35448295
Alignment:
| Q |
329 |
tatcccataatcatctacaccatcacacggaagtgttcaaattacattgtcttcacttggaggtagcaaactattaaaatatcaaagcatgtgttcatcc |
428 |
Q |
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| T |
35447991 |
tatcccataatcacctacaccatcacacggaagtgttcaaattacattgtcttcacttggaggtagcaaactattaaaatatcaaagcatgtgttcatcc |
35448090 |
T |
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| Q |
429 |
atgagttatggttttatgtacaacactgttctagcattttgttaaacctgcagccaagataaacaattnnnnnnnttcgttcatgtagtaaaaactaatt |
528 |
Q |
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| T |
35448091 |
atgagttatggttttatgtacaacactgttctagcattttgttaaacctgcagccaagataaacaattaaaaaaattcgtgcatgtagtaaaaactaatt |
35448190 |
T |
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| Q |
529 |
aaaaactcaggtagcttaaattgcactctacatgattataccaatacaagttaccaaagctacaaaccatgctatagtaataatagaagaaccatagcaa |
628 |
Q |
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| T |
35448191 |
aaaaactcacgtagcttaaattgcactctacatgattataccaatacaagttaccaaagctacaaaccatgctatagtaataatagaagaaccatagcaa |
35448290 |
T |
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| Q |
629 |
cacat |
633 |
Q |
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| T |
35448291 |
cacat |
35448295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 62 - 228
Target Start/End: Original strand, 35447724 - 35447890
Alignment:
| Q |
62 |
cattgctttcattgaaatatattttcctgttgtgaaacatacaagtattggagggaatgtatcacttgttgtaaaggagaatactttgatggataatata |
161 |
Q |
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| T |
35447724 |
cattgctttcattgaaatatattttcctgttgtgaaacatacaagtattggagggaatgtatcacttgttgtaaaggagaatactttgatggataatata |
35447823 |
T |
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| Q |
162 |
tataaagaaacatgacatcaaatgattagattttgagtactatactaataaagttatggaatatgga |
228 |
Q |
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| T |
35447824 |
tataaagtaacatgacatcaaatgattagattttgagtactatactaataaagttatggaatatgga |
35447890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 35447688 - 35447623
Alignment:
| Q |
1 |
ttattgtcattcaatctttatttttcaggactagctatgacttttttgtaattcatgtgatcattg |
66 |
Q |
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| T |
35447688 |
ttattgtcattcaatctttatttttcaggactagctatgacttttttgtaattcatgcgatcattg |
35447623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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