View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3393_high_9 (Length: 333)
Name: NF3393_high_9
Description: NF3393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3393_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 44818982 - 44819280
Alignment:
| Q |
20 |
gttttgccacatacactatatcctccttctgttttacatacaccattcacaataaaatatatgcatgtgtattagcaacaaagtagtttaattatgaaac |
119 |
Q |
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| T |
44818982 |
gttttgccaaatacactatatcctccttctgttttacatacaccattcacaataaaatatatgcatgtgtattagcaacaaagtagtttaattatgaaac |
44819081 |
T |
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| Q |
120 |
aaaatagnnnnnnngggattgagattttacttgagatgaataagtgctagagttctgagctcgaacaacaacactagaccatttcctccttgtagggaag |
219 |
Q |
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| T |
44819082 |
aaaatagaaaaaaagggattgagattttacttgagatgaataagtgctagagttctgagctcgaacaacaacactagaccatttcctccttgtagggaag |
44819181 |
T |
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| Q |
220 |
ataattgatgatattaaggtcgtgtttggtgaagtaacattaaccctccgccggaaacgcgataagttgcaatagccgtaagtgcttccaagtccaact |
318 |
Q |
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| T |
44819182 |
ataattgatgatattaaggtcgtgtttggtgaagtaacattaaccctccgccggaaacgcgataagttgcaatagccgtaagtgcttccaagtccaact |
44819280 |
T |
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