View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3393_low_16 (Length: 236)
Name: NF3393_low_16
Description: NF3393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3393_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 14138157 - 14137954
Alignment:
| Q |
9 |
atgaagaaagatgaagaaaagaccaaaaacggtttctttttctggtattgaagtttccttctgcatcatcaccatcatcatccagcaacttggttcttct |
108 |
Q |
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| T |
14138157 |
atgaagaaagatgaagaaaagaccaaaaacggtttctttttctggtattgaagtttccttctgcatcatcaccatcatcatctagcaacttggttcttct |
14138058 |
T |
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| Q |
109 |
tggtgtagctgtggatttgctacgcttgaaaacaatatcagaagtaacatttgcagaagaagatgaaggtttcatgttcatgttcatgttgatggaagat |
208 |
Q |
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| T |
14138057 |
tggtgtagctgtggatttgctacgcttgaaaacaatatcagaagtaacatt---agcagaagatgaaggt------ttcatgttcatgttgatggaagat |
14137967 |
T |
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| Q |
209 |
gaaggtttgttct |
221 |
Q |
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| T |
14137966 |
gaaggtttgttct |
14137954 |
T |
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