View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3393_low_18 (Length: 233)
Name: NF3393_low_18
Description: NF3393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3393_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 42063217 - 42063439
Alignment:
| Q |
1 |
ccggtaccagtcaccacaagagcaatgtaagcagaggaattgatcacgggaaaggtaaatgttattctctctgggggtggttttggcgagtcgttaattg |
100 |
Q |
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| T |
42063217 |
ccggtaccagtcaccacaagagcaatgtaagcagaggaattgatcacgggaaaggtaaatgttattctctctgggggtggttttggcgagtcgttaattg |
42063316 |
T |
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| Q |
101 |
aggtgacccattttttattctcatggacaagagggtgacctgggaacagagaagctacatgcccatcaggacccatgccaagcaacatgagatcaaattt |
200 |
Q |
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| T |
42063317 |
aggtaacccattttttattctcatggacaagagggtgacctgggaacagagaagctacatgcccatcaggacccatgccaagcaacatgagatcaaattt |
42063416 |
T |
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| Q |
201 |
tggaaatccactggctgatgatg |
223 |
Q |
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| T |
42063417 |
tggaaatccactggctgatgatg |
42063439 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 9514335 - 9514516
Alignment:
| Q |
39 |
attgatcacgggaaaggtaaatgttattctctctgggggtggttttggcgagtcgttaattgaggtgacccattttttattctcatggacaagagggtga |
138 |
Q |
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| T |
9514335 |
attgatcactggaaaagtgaaagtaattctctctgatggtggttttggtgagtcagtgaggaaagtaacccatttctgatcctcttggagaagagcatga |
9514434 |
T |
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| Q |
139 |
cctgggaacagagaagctacatgcccatcaggacccatgccaagcaacatgagatcaaattttggaaatccactggctgatg |
220 |
Q |
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| T |
9514435 |
cctgggaataaagatgcaacatgtccatccggacccatacctaggagcatgagatcaaattttggtaatccattggttgatg |
9514516 |
T |
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