View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3393_low_2 (Length: 653)
Name: NF3393_low_2
Description: NF3393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3393_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 13 - 638
Target Start/End: Complemental strand, 39285635 - 39285012
Alignment:
| Q |
13 |
cacagagtgagatctaaactataacatgtcttgcttaattcttttttcagtcggcatttctcttctagcctacctaccactacttaggaatcggatgaca |
112 |
Q |
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| T |
39285635 |
cacagagtgaggtctaaactataacatgtcttgcttaattcttttttcagtcggcatttctcttctagcctacctaccactacttaggaatcggatgaca |
39285536 |
T |
|
| Q |
113 |
tgcaagttaccaaatacttctgcattgcctacaatttctttggtttcaaagcaataaacatatactccacatcaacgaacaaaacaaaatagaagaaaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39285535 |
cgcaagttaccaaatacttctgcattgcctacaatttctttggtttcaaagcaataaacatatactccacatcaacgaacaaaac-aaatagaagaaaaa |
39285437 |
T |
|
| Q |
213 |
catggactattccctattaggatgcagaagtgcagtaaatcttaaggaagactcaattcaataatcaatgnnnnnnncaattaaagaatatcagtctctc |
312 |
Q |
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| T |
39285436 |
catggactattccctattaggatgcagaagtgcagtaaatcttaaggaagactcaattcaataatcaatgaaaaaaacaattaaagaatatcagtctctc |
39285337 |
T |
|
| Q |
313 |
tgtcaacaagtgagtcaactcattgcatagctcattatagcaacttaccagactgatttatgagtcttggggtcctccagctcactgcacagctcatcat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39285336 |
tgtcaacaagtgagtcaactcattgcatagctcattatagcaacttaccagactgatttatgagtcttggggtcctccagctcactgcgcagctcatcat |
39285237 |
T |
|
| Q |
413 |
agctagtgaacttacaaatttgcagtgacctctcaattctcaaaggacccctgacttattatgaacctgtcaaaacaaaatgactcccgtcaacaaatga |
512 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39285236 |
agctagtgaacttaaaaatttgcagtgacctctcaattctcaaagga-ccctgacttattatgaacctgtcaaaacaaaatgactcccgtcaacaaatga |
39285138 |
T |
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| Q |
513 |
agctaaactagaattcctaaaaagtagatagtatccacatacaaaccggagaaaacttagtcctgcaataaaaatgatatagtttcaagaaaaaatcatc |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39285137 |
agctaaactagaattcctaaaaagtagatagtatccacatacaaaccggagaaaacttagtcctgcaataaaaatgatatagtttcaagaaaaaatcatc |
39285038 |
T |
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| Q |
613 |
aattaaaatcattagagcttatatat |
638 |
Q |
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| T |
39285037 |
aattaaaatcattagagcttatatat |
39285012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 474 - 542
Target Start/End: Original strand, 17348202 - 17348270
Alignment:
| Q |
474 |
tgaacctgtcaaaacaaaatgactcccgtcaacaaatgaagctaaactagaattcctaaaaagtagata |
542 |
Q |
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||||||| |||||||||||||||| | || ||||||||||| | | |||| ||||||||| |||||||| |
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| T |
17348202 |
tgaacctctcaaaacaaaatgacttcggtgaacaaatgaagttgatctagtattcctaaatagtagata |
17348270 |
T |
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