View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3393_low_4 (Length: 648)
Name: NF3393_low_4
Description: NF3393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3393_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 328 - 632
Target Start/End: Original strand, 35447991 - 35448295
Alignment:
| Q |
328 |
tatcccataatcatctacaccatcacacggaagtgttcaaattacattgtcttcacttggaggtagcaaactattaaaatatcaaagcatgtgttcatcc |
427 |
Q |
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| T |
35447991 |
tatcccataatcacctacaccatcacacggaagtgttcaaattacattgtcttcacttggaggtagcaaactattaaaatatcaaagcatgtgttcatcc |
35448090 |
T |
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| Q |
428 |
atgagttatggttttatgtacaacactgttctagcattttgttaaacctgcagccaagataaacaattnnnnnnnttcgttcatgtagtaaaaactaatt |
527 |
Q |
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| T |
35448091 |
atgagttatggttttatgtacaacactgttctagcattttgttaaacctgcagccaagataaacaattaaaaaaattcgtgcatgtagtaaaaactaatt |
35448190 |
T |
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| Q |
528 |
aaaaactcaggtagcttaaattgcactctacatgattataccaatacaagttaccaaagctacaaaccatgctatagtaataatagaagaaccatagcaa |
627 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35448191 |
aaaaactcacgtagcttaaattgcactctacatgattataccaatacaagttaccaaagctacaaaccatgctatagtaataatagaagaaccatagcaa |
35448290 |
T |
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| Q |
628 |
cacat |
632 |
Q |
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||||| |
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| T |
35448291 |
cacat |
35448295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 35447664 - 35447890
Alignment:
| Q |
1 |
aaaaataaagattgaatgacaataaagacttgtggctaagcggctcactcaaagagaatgcattgctttcattgaaatatattttcctgttgtgaaacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35447664 |
aaaaataaagattgaatgacaataaagacttgtggctaaggggctcactcaaagagaatgcattgctttcattgaaatatattttcctgttgtgaaacat |
35447763 |
T |
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| Q |
101 |
acaagtattggagggaatgtatcacttgttgtaaaggagaatactttgatggataatatatataaagaaacatgacatcaaatgattagattttgagtac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35447764 |
acaagtattggagggaatgtatcacttgttgtaaaggagaatactttgatggataatatatataaagtaacatgacatcaaatgattagattttgagtac |
35447863 |
T |
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| Q |
201 |
tatactaataaagttatggaatatgga |
227 |
Q |
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| T |
35447864 |
tatactaataaagttatggaatatgga |
35447890 |
T |
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