View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3393_low_6 (Length: 434)
Name: NF3393_low_6
Description: NF3393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3393_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 3 - 420
Target Start/End: Original strand, 18221190 - 18221607
Alignment:
| Q |
3 |
cagagaacttgatctcagacaaacatgaaccctgcttgggaaccaaactagtagcggcatcattgataactgggctcttaggaggagaggcccagaagct |
102 |
Q |
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| T |
18221190 |
cagagaacttgatctcagacaaacatgaaccctgcttgggaaccaaactagtagcagcatcattgataactgggctcttaggaggagaggcccagaagct |
18221289 |
T |
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| Q |
103 |
ccatgagtttcctttctctgcaaattcattagctgagatgcttctacaaagtgttttgattgcaaattcgattcccatcacgtatttctcgtcaagtgta |
202 |
Q |
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| T |
18221290 |
ccatgagtttcctttctctgcaaattcattagctgagatgcttctacaaagtgttttgattgcaaattcgattcccatcacgtatttctcgtcaagtgta |
18221389 |
T |
|
| Q |
203 |
gggattttcttcccctctggctttccaaagctttgatcgttaaagtgagtgctaagagatttgaggcttggataccttagagatactttttgctcccctt |
302 |
Q |
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| T |
18221390 |
gggattttcttcccctctggctttccaaagctttgatcgttaaagtgagtgctaagagatttgaggcttggataccttagagatactttttgctcccctt |
18221489 |
T |
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| Q |
303 |
tgtcactgacctacaagatttcaacaactagtatatgaaatgaaacccaacaaagatgacatttttagaacttcataaagtgtttgaaataaaagagaga |
402 |
Q |
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| T |
18221490 |
tgtcactgacctacaagatttcaacaactagtatatgaaatgaaacccaacaaagatgacatttttagaacttcataaagtgtttgaaataaaagagaga |
18221589 |
T |
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| Q |
403 |
gctttttatgttatactt |
420 |
Q |
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| T |
18221590 |
tctttttatgttatactt |
18221607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 43012913 - 43013060
Alignment:
| Q |
11 |
ttgatctcagacaaacatgaaccctgcttgggaaccaaactagtagcggcatcattgataactgggctcttaggaggagaggcccagaagctccatgagt |
110 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| || |||||||||| |
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| T |
43012913 |
ttgatctcagaccaacatgaaccctgcttgggaaccaaactagtagcagcatcattgataactgggctcataggaggagagacccaaaaactccatgagt |
43013012 |
T |
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| Q |
111 |
ttcctttctctgcaaattcattagctgagatgcttctacaaagtgttt |
158 |
Q |
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| T |
43013013 |
ttcctttctcagcaaattcgttagctgagatgcttctacagagtgttt |
43013060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 218 - 377
Target Start/End: Original strand, 43013060 - 43013214
Alignment:
| Q |
218 |
tctggctttccaaagctttgatcgttaaagtgagtgctaagagatttgaggcttggataccttagagatactttttgctcccctttgtcactgacctaca |
317 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| |
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| T |
43013060 |
tctggctttccaaagcattgatctttaaagtgagtgctaagagatttgaggcttggataccttagagatacttcctgctcccatttgtcagtgacctaca |
43013159 |
T |
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| Q |
318 |
agatttcaacaactagtatatgaaatgaaacccaacaaagatgacatttttagaacttca |
377 |
Q |
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| T |
43013160 |
agatttcaacatctagt-----aaatgaaacccaacaaagatgacattttcagaacttca |
43013214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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