View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3393_low_7 (Length: 425)
Name: NF3393_low_7
Description: NF3393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3393_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 7 - 410
Target Start/End: Complemental strand, 49666578 - 49666175
Alignment:
| Q |
7 |
acatcatcatcattatcactttcatccataaaccatgttgagtgtttcttcaccaccaccttctctgtcttagggttgtggcatgtgctagaagaacaca |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49666578 |
acatcatcatcattatcactttcatccataaaccatgttgagtgtttcttcaccaccaccttctctgtcttagggttgtggcatgtgctagaagaacaca |
49666479 |
T |
|
| Q |
107 |
aagagagtccttgattttgagccaccacaacattcttcacccacatgctttgaataaaagacttcaccctctttctacaacctacaatagtaatgcctgt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
49666478 |
aagagagtccttgattttgagccaccacaacattcttcacccacatgctttgaataaaagacttcaccctctttctacaacccacaatagtaatgcctgt |
49666379 |
T |
|
| Q |
207 |
ggaattcttcaactcatcaaagagatcaaacccaagttttcttccttcttcatcatcacaattagccatcaaaagcatagaataaacatatttggcttca |
306 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49666378 |
ggaattcttcaactcaccaaagagatcaaacccaagttttcttccttcttcatcatcacaattagccatcaaaagcatagaataaacatatttggcttca |
49666279 |
T |
|
| Q |
307 |
tgatgaccctctagcgcagccttcttcaaattcttcaaacctaaatccaccatcaaagtactgaaatattgcaccattccttcacgataagtaatctcca |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49666278 |
tgatgaccctctagcgcagccttcttcaaattcttcaaacctaaatccaccatcaaagtactgaaatattgcaccattccttcacgataagtaatctcca |
49666179 |
T |
|
| Q |
407 |
agtt |
410 |
Q |
| |
|
|||| |
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|
| T |
49666178 |
agtt |
49666175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 169 - 410
Target Start/End: Original strand, 50935972 - 50936213
Alignment:
| Q |
169 |
ttcaccctctttctacaacctacaatagtaatgcctgtggaattcttcaactcatcaaagagatcaaacccaagttttcttccttcttcatcatcacaat |
268 |
Q |
| |
|
||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
50935972 |
ttcaccctctttctacaccccacaatagtaatgcccgtggaattctttaactcatcaaagagatcaaacccaagttttcttccttcatcatcatcacaat |
50936071 |
T |
|
| Q |
269 |
tagccatcaaaagcatagaataaacatatttggcttcatgatgaccctctagcgcagccttcttcaaattcttcaaacctaaatccaccatcaaagtact |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50936072 |
tagccatcaaaagcatagaataaacatatttggcttcatgatgaccctctagtgcagtcttcttcaaattcttcaaacctaaatccaccatcaaagtact |
50936171 |
T |
|
| Q |
369 |
gaaatattgcaccattccttcacgataagtaatctccaagtt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
50936172 |
gaaatattgcaccattccttcacgataaataatctccaagtt |
50936213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 50911584 - 50911737
Alignment:
| Q |
11 |
catcatcattatcactttcatccataaaccatgttgagtgtttcttcaccaccaccttctctgtcttagggttgtggcatgtgctagaagaacacaaaga |
110 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||||| ||| |||||||||||||||||| ||||||||||||| |
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|
| T |
50911584 |
catcatcattatcaaattcatccttaaaccatattgagtgtttcttcacc---accttctctctctatgggttgtggcatgtgctaaaagaacacaaaga |
50911680 |
T |
|
| Q |
111 |
gagtccttgattttgagccaccacaacattcttcacccacatgctttgaataaaaga |
167 |
Q |
| |
|
| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50911681 |
caatccttgatttggagacaccacaacattcttcacccacatgctttgaataaaaga |
50911737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 46606794 - 46606847
Alignment:
| Q |
11 |
catcatcattatcactttcatccataaaccatgttgagtgtttcttcaccacca |
64 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46606794 |
catcatcattatcaaattcatccataaaccatgttgagtgtttcttcaccacca |
46606847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 88 - 407
Target Start/End: Complemental strand, 14573239 - 14572923
Alignment:
| Q |
88 |
catgtgctagaagaacacaaagagagtccttgattttgagccaccacaacattcttcacccacatgctttgaataaaagacttcaccctctttctacaac |
187 |
Q |
| |
|
|||||||||||| |||||||||| | | ||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||| || |
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|
| T |
14573239 |
catgtgctagaacaacacaaagacactgcttgattttgaaccaccacatgatttttcacccacatgctttgaataaaagacttcaccctcttcct----- |
14573145 |
T |
|
| Q |
188 |
ctacaatagtaatgcctgtggaattcttcaactcatcaaagagatcaaacccaagttttcttccttcttcatcatcacaattagccatcaaaagcataga |
287 |
Q |
| |
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| |||| |||||| ||||||||| ||||| ||| ||||||||||| | |||||||||||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
14573144 |
-tgtaatactaatgcatgtggaatttttcaattcaccaaagagatcataaccaagttttcttccttcttcgtcttcacaattagccatcaaaagcataga |
14573046 |
T |
|
| Q |
288 |
ataaacatatttggcttcatgatgaccctctagcgcagccttcttcaaattcttcaaacctaa---atccaccatcaaagtactgaaatattgcaccatt |
384 |
Q |
| |
|
|||||||||||| || |||||||||||||||| ||||||||||||||||||| |||||||| || || |||| ||||||| ||||||||| ||||| |
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|
| T |
14573045 |
ataaacatatttcgcatcatgatgaccctctaatgcagccttcttcaaattctcaaaacctaaattattcaacatcgaagtactaaaatattgctccatt |
14572946 |
T |
|
| Q |
385 |
ccttcacgataagtaatctccaa |
407 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
14572945 |
ccttcacgataaagaatctccaa |
14572923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 88 - 407
Target Start/End: Complemental strand, 34305114 - 34304795
Alignment:
| Q |
88 |
catgtgctagaagaacacaaagagagtccttgattttgagccaccacaacattcttcacccacatgctttgaataaaagacttcaccctctttctacaac |
187 |
Q |
| |
|
|||||||||||| |||||||||| | | ||||||||||| ||||||| ||| ||| ||||||||||| |||||| |||| ||| ||||| || |||| |
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|
| T |
34305114 |
catgtgctagaacaacacaaagacaattcttgattttgaaccaccaccgaatttctcaaccacatgcttttaataaatgactgcactctcttcctgcaac |
34305015 |
T |
|
| Q |
188 |
ctacaatagtaatgcctgtggaattcttcaactcatcaaagagatcaaacccaagttttcttccttcttcatcatcacaattagccatcaaaagcataga |
287 |
Q |
| |
|
|||| | |||||| | ||||| |||| ||| |||||||||||||||| | ||||||| ||||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
34305014 |
tcacaagactaatgcacgatgaatttttcagttcaccaaagagatcaaaccctaattttctttcttctccattttcagcattagccatcaaaagcataga |
34304915 |
T |
|
| Q |
288 |
ataaacatatttggcttcatgatgaccctctagcgcagccttcttcaaattcttcaaacctaaatccaccatcaaagtactgaaatattgcaccattcct |
387 |
Q |
| |
|
||| |||||||| ||||||||||||||| ||| ||||| || |||| ||| | |||||||||| |||||||||||| || |||||||||||||||||| |
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|
| T |
34304914 |
atatacatatttagcttcatgatgaccccctaatgcagcatttttcagattgtcaaaacctaaattcaccatcaaagtgctaaaatattgcaccattcct |
34304815 |
T |
|
| Q |
388 |
tcacgataagtaatctccaa |
407 |
Q |
| |
|
||||| ||| |||||||||| |
|
|
| T |
34304814 |
tcacggtaaataatctccaa |
34304795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 222 - 407
Target Start/End: Original strand, 31001260 - 31001445
Alignment:
| Q |
222 |
atcaaagagatcaaacccaagttttcttccttcttcatcatcacaattagccatcaaaagcatagaataaacatatttggcttcatgatgaccctctagc |
321 |
Q |
| |
|
||||||||||||||| || | |||| |||||||| | || | | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
31001260 |
atcaaagagatcaaagcccaattttattccttctccgtcgttagaattagccatcaaaagcatagaataaacatatttagcttcatgatgaccctctaat |
31001359 |
T |
|
| Q |
322 |
gcagccttcttcaaattcttcaaacctaaatccaccatcaaagtactgaaatattgcaccattccttcacgataagtaatctccaa |
407 |
Q |
| |
|
|||||| |||| ||||| ||| | |||| |||||||||| ||| || |||||||||||||||||| ||||| ||||||||| |
|
|
| T |
31001360 |
aaagcctttttcagattctcaaaatccaaattcaccatcaaaatacaaaattattgcaccattccttcatgataaagaatctccaa |
31001445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 316
Target Start/End: Original strand, 30997354 - 30997397
Alignment:
| Q |
273 |
catcaaaagcatagaataaacatatttggcttcatgatgaccct |
316 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30997354 |
catcaaaagcatagaataaacatatttcacttcatgatgaccct |
30997397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 31001155 - 31001223
Alignment:
| Q |
103 |
cacaaagagagtccttgattttgagccaccacaacattcttcacccacatgctttgaataaaagacttc |
171 |
Q |
| |
|
|||||||| | | ||||||||||| | |||||| ||| ||||| |||||||||||||||||||||||| |
|
|
| T |
31001155 |
cacaaagacaattcttgattttgaacaaccacatgatttttcactcacatgctttgaataaaagacttc |
31001223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 404
Target Start/End: Original strand, 30997417 - 30997463
Alignment:
| Q |
358 |
atcaaagtactgaaatattgcaccattccttcacgataagtaatctc |
404 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
30997417 |
atcaaagtacagaaatattgcatcattccttcacaataaataatctc |
30997463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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