View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3393_low_8 (Length: 409)
Name: NF3393_low_8
Description: NF3393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3393_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 11175100 - 11175492
Alignment:
| Q |
1 |
ttttcaagagatttatttcgcaaaaagagattgaaataaagacttgttattgaagagtgtgaaattggatcttctacggttgaagatggtg-tgcaactg |
99 |
Q |
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| T |
11175100 |
ttttcaagagatttatttcgcaaaaagagattgaaatagagacttgctactgaagagtgtgaaattggatcttctacggttaaagatggtgctgcaattg |
11175199 |
T |
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| Q |
100 |
aaagaggcgttaaatttataaaaataaactttatttttgtaaatttaacgactcccccctacaactgcaacaccatacttcagcatctgtagaggatttt |
199 |
Q |
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| T |
11175200 |
aaagagacgttaaatttataaaaataaactttatttttgtaaatttaacgactcccccctacaactgcaacaccatacttaagcatccgtagaggatttt |
11175299 |
T |
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| Q |
200 |
tatttactctaaaatagtt-actaataaatttcattcaatataatttgcataggaatatataatagaaaacttttgaaaaaacagtgtgacgacaagaat |
298 |
Q |
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| T |
11175300 |
tatttactctaaaatagtttactaataaatatcattcaatataatttgcataggaatatataatagaaaacttttgaaaaaacagtgtgacgacaagaat |
11175399 |
T |
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| Q |
299 |
tcaaggttggaccacaccatgatacgaaaatggcacattccattcattgctaagacatcttttctcaacatttaactaaactgatgaatgtgg |
391 |
Q |
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| T |
11175400 |
tcaaggatggaccacaccatgatacgaatatggcacattccattctttgctaagacatcttttctcaacatttaactaaactgatgaatgtgg |
11175492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 11175249 - 11175207
Alignment:
| Q |
107 |
cgttaaatttataaaaataaactttatttttgtaaatttaacg |
149 |
Q |
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| T |
11175249 |
cgttaaatttacaaaaataaagtttatttttataaatttaacg |
11175207 |
T |
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