View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3393_low_9 (Length: 405)

Name: NF3393_low_9
Description: NF3393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3393_low_9
NF3393_low_9
[»] chr4 (5 HSPs)
chr4 (1-388)||(7755855-7756239)
chr4 (147-226)||(7840117-7840196)
chr4 (1-69)||(7839982-7840050)
chr4 (1-88)||(7763311-7763398)
chr4 (339-388)||(43980656-43980705)
[»] chr3 (7 HSPs)
chr3 (344-388)||(36188920-36188964)
chr3 (343-388)||(21654407-21654452)
chr3 (343-388)||(32322152-32322197)
chr3 (343-388)||(53020345-53020390)
chr3 (341-377)||(47599623-47599659)
chr3 (345-377)||(54485292-54485324)
chr3 (344-388)||(55400900-55400944)
[»] chr5 (1 HSPs)
chr5 (331-388)||(35462658-35462715)
[»] chr1 (5 HSPs)
chr1 (343-388)||(36037398-36037443)
chr1 (344-388)||(40935568-40935612)
chr1 (341-388)||(6848262-6848309)
chr1 (345-388)||(40960430-40960473)
chr1 (345-377)||(15912081-15912113)
[»] chr8 (5 HSPs)
chr8 (345-388)||(44411163-44411206)
chr8 (346-388)||(24510652-24510694)
chr8 (343-388)||(37598233-37598278)
chr8 (344-388)||(25321539-25321583)
chr8 (344-388)||(35260221-35260265)
[»] chr2 (3 HSPs)
chr2 (345-388)||(35832573-35832616)
chr2 (343-388)||(15858639-15858684)
chr2 (344-388)||(10979330-10979374)


Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 7755855 - 7756239
Alignment:
Q  1 gatgatcggtgaaagagtagcgtgttccgcctctgaaactcagaaaaacatcgtgagtgaaatcttcgtagtgatttgccattgatgaagattatggtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7755855 gatgatcggtgaaagagtagcgtgttccgcctctgaaactcagaaaaacatcgtgagtgaaatcttcgtagtgatttgccattgatgaagattatggtga 7755954  T
Q  101 agttttaattttgagttttgaggtttatgtgtaaaattgtagaatggtttaagttttaaatgaagtgtggagcttcaaaagtcagaagaatgcgggatta 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7755955 agttt-aattttgagttttgaggtttatgtgtaaaattgtagaatggtttaagttttaaatgaagtgtggagcttcaaaagtcagaagaatgcgggatta 7756053  T
Q  201 caaagaaacggtctacatgatgatgcagagttaattggaaagtcacgtactcaactctctttannnnnnnnatatgaatcatggatttgactttaaccgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||        |||||||||||||||||||||||||||||    
T  7756054 caaagaaacggtctacatgatgatgcagagttaattggaaagtcacgtactcaactctc--tattttttttatatgaatcatggatttgactttaaccgt 7756151  T
Q  301 aaaatacaaaacactccataatactcaacattatcataatatatatactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  7756152 aaaatacaaaacactccataatactcaacattatcataatatatatactccttccatcccaatttataagacaaaaacaccaattcac 7756239  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 7840117 - 7840196
Alignment:
Q  147 gtttaagttttaaatgaagtgtggagcttcaaaagtcagaagaatgcgggattacaaagaaacggtctacatgatgatgc 226  Q
    |||| |||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||| ||||||||||||||||||    
T  7840117 gtttgagttttaaatcaagtgtggagcttcaaaagtcagaagaaagcgggatcacaatgaaccggtctacatgatgatgc 7840196  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 7839982 - 7840050
Alignment:
Q  1 gatgatcggtgaaagagtagcgtgttccgcctctgaaactcagaaaaacatcgtgagtgaaatcttcgt 69  Q
    ||||||||||||| |||||||| |||| |||||||||||| || ||||| ||||||||||| |||||||    
T  7839982 gatgatcggtgaaggagtagcgagttctgcctctgaaactgaggaaaacgtcgtgagtgaagtcttcgt 7840050  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 7763311 - 7763398
Alignment:
Q  1 gatgatcggtgaaagagtagcgtgttccgcctctgaaactcagaaaaacatcgtgagtgaaatcttcgtagtgatttgccattgatga 88  Q
    ||||||| ||||| |||||||| ||||||||||||||||||||||| |  ||||| |||||||  || | |||||| |||||||||||    
T  7763311 gatgatccgtgaaggagtagcgagttccgcctctgaaactcagaaatatgtcgtgtgtgaaataatcattgtgattcgccattgatga 7763398  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 388
Target Start/End: Complemental strand, 43980705 - 43980656
Alignment:
Q  339 atatatatactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    ||||||||| ||| ||| ||| |||||||||||||||||||| |||||||    
T  43980705 atatatatattccctccgtcctaatttataagcaaaaaacactaattcac 43980656  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 36188920 - 36188964
Alignment:
Q  344 tatactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    |||||||| |||||||||||||||||||||||||||| |||||||    
T  36188920 tatactccctccatcccaatttataagcaaaaaacacaaattcac 36188964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 21654452 - 21654407
Alignment:
Q  343 atatactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    ||||||||| ||| ||| |||||||||||||||||||| |||||||    
T  21654452 atatactccctccgtcctaatttataagcaaaaaacactaattcac 21654407  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 32322152 - 32322197
Alignment:
Q  343 atatactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    ||||||||| ||| ||| |||||||||||||||||||| |||||||    
T  32322152 atatactccctccgtcctaatttataagcaaaaaacactaattcac 32322197  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 53020390 - 53020345
Alignment:
Q  343 atatactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    ||||||||| ||| ||| |||||||||||||||||||| |||||||    
T  53020390 atatactccctccgtcctaatttataagcaaaaaacactaattcac 53020345  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 377
Target Start/End: Complemental strand, 47599659 - 47599623
Alignment:
Q  341 atatatactccttccatcccaatttataagcaaaaaa 377  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  47599659 atatatactccttccgtcccaaattataagcaaaaaa 47599623  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 377
Target Start/End: Complemental strand, 54485324 - 54485292
Alignment:
Q  345 atactccttccatcccaatttataagcaaaaaa 377  Q
    ||||||| |||||||||||||||||||||||||    
T  54485324 atactccctccatcccaatttataagcaaaaaa 54485292  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 55400944 - 55400900
Alignment:
Q  344 tatactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    |||||||| ||| ||| |||||||||||||||||||| |||||||    
T  55400944 tatactccctccgtcctaatttataagcaaaaaacactaattcac 55400900  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 388
Target Start/End: Original strand, 35462658 - 35462715
Alignment:
Q  331 ttatcataatatatatactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    ||||| ||||| ||||||||| ||| ||| |||||||||||||||||||| |||||||    
T  35462658 ttatcgtaataaatatactccctccgtcctaatttataagcaaaaaacactaattcac 35462715  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 36037443 - 36037398
Alignment:
Q  343 atatactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    ||||||||| ||| |||||||||||||||||||||||| |||||||    
T  36037443 atatactccctccgtcccaatttataagcaaaaaacacaaattcac 36037398  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 40935568 - 40935612
Alignment:
Q  344 tatactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    |||||||| ||||||| |||||||||||||||||||| |||||||    
T  40935568 tatactccctccatcctaatttataagcaaaaaacactaattcac 40935612  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 388
Target Start/End: Original strand, 6848262 - 6848309
Alignment:
Q  341 atatatactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    ||||||||||| ||||||| |||||||||| ||||||||| |||||||    
T  6848262 atatatactccctccatcctaatttataagaaaaaaacactaattcac 6848309  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 40960430 - 40960473
Alignment:
Q  345 atactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||    
T  40960430 atactccttccgtcctaatttataagcaaaaaacactaattcac 40960473  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 377
Target Start/End: Original strand, 15912081 - 15912113
Alignment:
Q  345 atactccttccatcccaatttataagcaaaaaa 377  Q
    |||||||||||||||||| ||||||||||||||    
T  15912081 atactccttccatcccaaattataagcaaaaaa 15912113  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 44411163 - 44411206
Alignment:
Q  345 atactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||    
T  44411163 atactccttccgtcctaatttataagcaaaaaacactaattcac 44411206  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 24510652 - 24510694
Alignment:
Q  346 tactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    |||||| |||||||||||||||||||||||||||  |||||||    
T  24510652 tactccctccatcccaatttataagcaaaaaacataaattcac 24510694  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 37598278 - 37598233
Alignment:
Q  343 atatactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    ||||||||| ||| ||| |||||||||||||||||||| |||||||    
T  37598278 atatactccctccgtcctaatttataagcaaaaaacactaattcac 37598233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 25321539 - 25321583
Alignment:
Q  344 tatactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    |||||||| ||| ||| |||||||||||||||||||| |||||||    
T  25321539 tatactccctccgtcctaatttataagcaaaaaacactaattcac 25321583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 35260265 - 35260221
Alignment:
Q  344 tatactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    |||||||| ||| ||| |||||||||||||||||||| |||||||    
T  35260265 tatactccctccgtcctaatttataagcaaaaaacactaattcac 35260221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 35832616 - 35832573
Alignment:
Q  345 atactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    ||||||| ||||||| |||||||||||||||||||| |||||||    
T  35832616 atactccctccatcctaatttataagcaaaaaacactaattcac 35832573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 15858639 - 15858684
Alignment:
Q  343 atatactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    ||||||||| ||| ||| |||||||||||||||||||| |||||||    
T  15858639 atatactccctccgtcctaatttataagcaaaaaacactaattcac 15858684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 10979374 - 10979330
Alignment:
Q  344 tatactccttccatcccaatttataagcaaaaaacaccaattcac 388  Q
    |||||||| ||| ||| |||||||||||||||||||| |||||||    
T  10979374 tatactccctccgtcctaatttataagcaaaaaacactaattcac 10979330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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