View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3394_high_10 (Length: 250)
Name: NF3394_high_10
Description: NF3394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3394_high_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 24771069 - 24771307
Alignment:
| Q |
12 |
atgaaaggagcaattccaataacttaattaaatattgagcatcattcaaaaggtttagaaaggaacaagaggaaggaacctttggtttcggaatgagatt |
111 |
Q |
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| T |
24771069 |
atgaaaggagcaattccaataacttaattaaatattgagcatcattcaaaaggtttagaaaggaacaagaggaaggaacctttggtttcggaatgagatt |
24771168 |
T |
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| Q |
112 |
agtgcggagcctagcggaactttcttcaagatcttcatctttgaatccagttcctacacatcataacagattattactatattagagatgattaacttta |
211 |
Q |
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| T |
24771169 |
agtgcggagcctagcggaactttcttcaagatcttcatctttgaatccagttcctacacatcataacagattattactatattagagatgattaacttta |
24771268 |
T |
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| Q |
212 |
catgcaagaaacaacggagtagcaacttaaatcaagaac |
250 |
Q |
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| T |
24771269 |
tatgcaagaaacaacggagtagcaacttaaatcaagaac |
24771307 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 168
Target Start/End: Complemental strand, 21004505 - 21004412
Alignment:
| Q |
75 |
aacaagaggaaggaacctttggtttcggaatgagattagtgcggagcctagcggaactttcttcaagatcttcatctttgaatccagttcctac |
168 |
Q |
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| T |
21004505 |
aacaagagccagcaacctttggtttgggaatcactttagagcgaaggctagtagaacgttcttcaagcacttcttctttgaatccagttcctac |
21004412 |
T |
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