View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3394_high_11 (Length: 228)

Name: NF3394_high_11
Description: NF3394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3394_high_11
NF3394_high_11
[»] chr1 (8 HSPs)
chr1 (19-228)||(30710220-30710429)
chr1 (19-228)||(30671565-30671765)
chr1 (36-228)||(30689480-30689660)
chr1 (35-90)||(30656420-30656475)
chr1 (169-228)||(30656545-30656604)
chr1 (35-90)||(30698362-30698417)
chr1 (169-228)||(30718644-30718703)
chr1 (156-228)||(30698474-30698546)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 30710220 - 30710429
Alignment:
Q  19 tgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgatgatccctctgctgattcttgaaatttcc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30710220 tgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgatgatccctctgctgattcttgaaatttcc 30710319  T
Q  119 ctgctttaccctttttactttttgacgatgaccttaattttctttggttgtagtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30710320 ctgctttaccctttttactttttgacgatgaccttaattttctttggttgtagtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatc 30710419  T
Q  219 atattgaatc 228  Q
    ||||||||||    
T  30710420 atattgaatc 30710429  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 30671565 - 30671765
Alignment:
Q  19 tgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgatgatccctctgctgattcttgaaatttcc 118  Q
    |||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||   ||||||||||| |   |||||   |||||    
T  30671565 tgatgatctgacatagttaaaagttgctcaagatattcaactcccaaatcctctaacaccaaaacact---tgatccctctgattgatcttg---tttcc 30671658  T
Q  119 ctgct---ttaccctttttactttttgacgatgaccttaattttctttggttgtagtgtctctctttgagtgcaagtgcaggtgaagacccttttctgca 215  Q
    |||||   |||  |||| ||  ||||   ||| ||   | ||||||||| |   |||||||||| |||||||||||||||||||||||||||| ||||||    
T  30671659 ctgctttattattctttgtagctttt---gataac---atttttctttgttcacagtgtctctccttgagtgcaagtgcaggtgaagacccttctctgca 30671752  T
Q  216 atcatattgaatc 228  Q
    |||||||||||||    
T  30671753 atcatattgaatc 30671765  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 36 - 228
Target Start/End: Original strand, 30689480 - 30689660
Alignment:
Q  36 tagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgatgatccctctgctgattcttgaaatttccctgctttacccttttta 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||   |||||| |||| |   |||||   |||||||||||||  ||||  |    
T  30689480 tagaagttgctcaagatattcaactcccaaatcctctaacaccaaaacact---tgatccttctgattcatcttg---tttccctgctttattctttaca 30689573  T
Q  136 ctttttgacgatgaccttaattttctttggttgtagtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatc 228  Q
    | ||||   ||| ||   |  |||||||| |  ||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  30689574 cctttt---gataac---atctttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatc 30689660  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 30656420 - 30656475
Alignment:
Q  35 ttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgat 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30656420 ttagaagttgctcaagatattcaactcccaaatcctctaacaccaaaacacttgat 30656475  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 30656545 - 30656604
Alignment:
Q  169 tagtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatc 228  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  30656545 tagtgcctctcttttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatc 30656604  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 30698362 - 30698417
Alignment:
Q  35 ttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgat 90  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  30698362 ttagaagttgctcgagatattcaactcccaaatcctctaacaccaaaacacttgat 30698417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 30718644 - 30718703
Alignment:
Q  169 tagtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatc 228  Q
    ||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  30718644 tagtgcctctcttttagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatc 30718703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 30698474 - 30698546
Alignment:
Q  156 ttttctttggttgtagtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatc 228  Q
    ||||||||| |  ||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  30698474 ttttctttgttcatagtgcctttcttttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatc 30698546  T

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