View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3394_high_2 (Length: 554)

Name: NF3394_high_2
Description: NF3394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3394_high_2
NF3394_high_2
[»] chr1 (2 HSPs)
chr1 (22-544)||(51010444-51010966)
chr1 (31-80)||(51014077-51014126)


Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 22 - 544
Target Start/End: Complemental strand, 51010966 - 51010444
Alignment:
Q  22 aacattaccaacatcttcttgcttttgttttgaaacatagccattcccaacatgaaaaccatgttctgcttttgtaacattgttattattatttggttta 121  Q
    |||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51010966 aacagtaccaacatcttcctgcttttgttttgatacatagccattcccaacatgaaaaccatgttctgcttttgtaacattgttattattatttgcttta 51010867  T
Q  122 acttgaacaccatcaacatatacgcagttactttcagttcctgtttctgaattttcctcaagttcatcttgaagttccttcacttgtttctgcaaatcct 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51010866 acttgaacaccatcaacatatacgcagttactttcagttcctgtttctgaattttcctcaagttcatcttgaagttccttcacttgcttctgcaaatcct 51010767  T
Q  222 tcacaaattcaatagcatcaccaagaatagaagctctatcaagctttgagattcttggaaccaatgaacgaaggttatataacctatcattcagtttctt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51010766 tcacaaattcaatagcatcaccaagaatagaagctctatcaagctttgagattcttggaaccaatgaacgaaggttatataacctatcattcagtttctt 51010667  T
Q  322 ccttctttttctctcagcaacaaggttctttgattggtttccttttccacttcttctcctatattttccatcatcctcttcttcattttgatcactgcaa 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51010666 ccttctttttctctcagcaacaaggttctttgattggtttccttttccacttcttctcctatattttccatcatcctcttcttcattttgatcactgcaa 51010567  T
Q  422 tctgacattgaatctgatctgccaacaacattttcttgcttcttttttgtgtctaaaggatccacaaacatatattgattattttctgtcatcaagcttt 521  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  51010566 tctgacattgaatctgatctgccaacaacattttcttgcttcttttttgtgtctaaaggatccacaaacacatattgattattttctgtcatcaagcttt 51010467  T
Q  522 tgttatcatgttcctcttctgtg 544  Q
    || ||||||||||||||||||||    
T  51010466 tgctatcatgttcctcttctgtg 51010444  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 51014126 - 51014077
Alignment:
Q  31 aacatcttcttgcttttgttttgaaacatagccattcccaacatgaaaac 80  Q
    |||| |||| || ||||||||||||||||||||||||  |||||||||||    
T  51014126 aacaccttcctgtttttgttttgaaacatagccattcggaacatgaaaac 51014077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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