View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3394_low_1 (Length: 572)
Name: NF3394_low_1
Description: NF3394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3394_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 1441761 - 1441286
Alignment:
| Q |
1 |
tcatgatcaatattatattaactctttatttcactattttgatgatacgttactcagtgtctgttagtttatggaattaatccttaatttgactacctga |
100 |
Q |
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| T |
1441761 |
tcatgatcaatataatattaactctttatttcactatttcgatgatacgttactcagtgtctgttagtttatggaattaatccttaatttgactacctga |
1441662 |
T |
|
| Q |
101 |
atgtgaggatgattgttatatgctttattttttgtttaataatgaacaactaaagagaatttgagatgtttcagatgttgcacgcctgcatattttaagc |
200 |
Q |
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| T |
1441661 |
atgtgaggatgattgttatatgctttattttttgtctaataatgaacaactaaagataatttgagatgtttcagatgttgcacgcctgcatattttaagc |
1441562 |
T |
|
| Q |
201 |
tattgttaaatcttagcattgaatgttacatttccggttgctctaagttttgggcttgtaaacttgtcaacaaagctgaaaagtaattattcttattata |
300 |
Q |
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| T |
1441561 |
tattgttaaatcttagcattgaatgttacatttccggttgctctaagttttgggcttgtgaacttgtcaacaaaggtgaaaagtaattattcttattata |
1441462 |
T |
|
| Q |
301 |
gcaacagagtttcctaatgatcaatttttatgatctgggttttatttttgtgatggtttgatgatagtttttaatgtgccactgattattgtggaagtaa |
400 |
Q |
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| T |
1441461 |
gcaacagagtttcctaatgatcaattttcatgatgtgggttttatttttgtgatggtttgatgatagtttttaatgtgccactgattattgtggaagtaa |
1441362 |
T |
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| Q |
401 |
ctcagtccctattttcctaatttatatttatcttgcttatgaagcgcaaggactcatcacataataacatgaaata |
476 |
Q |
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| T |
1441361 |
ctcggtccctattttcctaatttatatttatcttgcttatgaagcgcaaggactcatcacataataacatgaaata |
1441286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 1453481 - 1453430
Alignment:
| Q |
38 |
tttgatgatacgttactcagtgtctgttagtttatggaattaatccttaatt |
89 |
Q |
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||||||||||| ||||||| | ||||||| ||||| |||||||||||||||| |
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| T |
1453481 |
tttgatgatacattactcactttctgttactttatagaattaatccttaatt |
1453430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 1465173 - 1465122
Alignment:
| Q |
38 |
tttgatgatacgttactcagtgtctgttagtttatggaattaatccttaatt |
89 |
Q |
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||||||||||| ||||||| | ||||||| ||||| |||||||||||||||| |
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| T |
1465173 |
tttgatgatacattactcactttctgttactttatagaattaatccttaatt |
1465122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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