View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3394_low_8 (Length: 258)

Name: NF3394_low_8
Description: NF3394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3394_low_8
NF3394_low_8
[»] chr4 (5 HSPs)
chr4 (12-249)||(21800970-21801207)
chr4 (16-240)||(45892962-45893182)
chr4 (16-206)||(48665477-48665663)
chr4 (91-240)||(12583525-12583673)
chr4 (16-196)||(49421029-49421208)
[»] chr7 (9 HSPs)
chr7 (16-240)||(23773068-23773288)
chr7 (69-240)||(26469940-26470112)
chr7 (69-240)||(26546380-26546552)
chr7 (18-223)||(11275814-11276006)
chr7 (14-124)||(22859647-22859752)
chr7 (12-74)||(26469812-26469869)
chr7 (12-74)||(26546284-26546341)
chr7 (46-119)||(12119548-12119621)
chr7 (16-77)||(33435765-33435822)
[»] scaffold0219 (1 HSPs)
scaffold0219 (15-236)||(6216-6433)
[»] chr3 (1 HSPs)
chr3 (12-240)||(6000194-6000418)
[»] chr2 (3 HSPs)
chr2 (12-240)||(36658048-36658272)
chr2 (48-102)||(20361543-20361597)
chr2 (48-109)||(20429347-20429409)
[»] chr6 (1 HSPs)
chr6 (16-237)||(23660945-23661162)
[»] scaffold0527 (2 HSPs)
scaffold0527 (16-244)||(3599-3818)
scaffold0527 (68-244)||(11662-11834)
[»] chr8 (2 HSPs)
chr8 (16-232)||(923420-923630)
chr8 (47-90)||(42773176-42773219)
[»] chr1 (2 HSPs)
chr1 (23-207)||(16180807-16180990)
chr1 (46-111)||(9004840-9004906)
[»] chr5 (1 HSPs)
chr5 (47-223)||(32538367-32538546)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 21800970 - 21801207
Alignment:
Q  12 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaatatatttat 111  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21800970 gccacaatgatgataaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgttacgtgtttttatgtataaatgaaaatatatttat 21801069  T
Q  112 gggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgt 211  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21801070 gggtttcagatcaccgttgattaagcgccgcaacagctgtcctttcaaagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgt 21801169  T
Q  212 cgttgtcttgtagagatctggtgttgacgtgatgatgt 249  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  21801170 cgttgtcttgtagagatctggtgttgacgtgattatgt 21801207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 45893182 - 45892962
Alignment:
Q  16 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatatttatggg 114  Q
    |||||||||||||||||||||||||||||     | |||||||| | ||||||||||||||| |||||||||||||||||||||||| ||||||||| ||    
T  45893182 caatgatgacaaatatgtgtcacatgttt-----tcatgtttatcaatggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttatagg 45893088  T
Q  115 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgt 214  Q
    |||||||||  ||||||| ||||||||| ||  ||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||  ||| ||    
T  45893087 tttcagatcgtcgttgatgaagcgccgccacggctgtccttttagagtcttggtgtgtgttgattctattgtggtcgctggtttcgttcaacatcgttgt 45892988  T
Q  215 tgtcttgtagagatctggtgttgacg 240  Q
    |||||| ||||| | |||||||||||    
T  45892987 tgtcttatagagctatggtgttgacg 45892962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 48665477 - 48665663
Alignment:
Q  16 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaata-tatttatggg 114  Q
    |||||||||||||||||||||||||||||     |||||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  48665477 caatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaaaatatttatggg 48665571  T
Q  115 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaac 206  Q
    ||| |||||  ||| ||| |||||||||| |  ||||||||||||||||||  ||||||||||||||||||||||  ||||||| |||||||    
T  48665572 ttttagatcgtcgtcgatgaagcgccgcagcggctgtcctttcagagtctttttgtgtgttgattctattgtggttgctggtttcgttcaac 48665663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 91 - 240
Target Start/End: Complemental strand, 12583673 - 12583525
Alignment:
Q  91 tataaatgaaaa-tatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggt 189  Q
    |||||||||||| |||||||||||||||||||||  ||| ||| ||||||| || | |||||||||||| |||| ||||||||  ||||| |||||| ||    
T  12583673 tataaatgaaaaatatatttatgggtttcagatcgtcgtcgatgaagcgcctcagcgactgtcctttcatagtcatggtgtgt--tgattatattgtcgt 12583576  T
Q  190 cactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacg 240  Q
    ||||||||| |||||||| ||| |||||||||||||| |||||||||||||    
T  12583575 cactggtttcgttcaacgtcgttgttgtcttgtagagctctggtgttgacg 12583525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 49421208 - 49421029
Alignment:
Q  16 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatggg 114  Q
    ||||||||| ||||| ||||| ||| |||  |||||||||||||||||| |||| ||||||| ||| |||||||| ||||| | |||||||||||||| |    
T  49421208 caatgatgataaatacgtgtctcatattt--tttttatgtttattagtgataaacatatgtctcgtatttttatgcataaaagaaaaatatatttatgag 49421111  T
Q  115 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggt 196  Q
    ||| | |||| ||| | | |||||||||  | |||||||| ||| ||||||| |||  ||||||||| |||| |||||||||    
T  49421110 ttttatatcatcgtcggtgaagcgccgccccgactgtcctctcacagtcttgatgtaagttgattctgttgttgtcactggt 49421029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 23773068 - 23773288
Alignment:
Q  16 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatggg 114  Q
    |||||||||||||||||||||||| |     ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |    
T  23773068 caatgatgacaaatatgtgtcacagg-----tttttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttatgag 23773162  T
Q  115 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgt 214  Q
    |||||||||  ||| ||| |||||||||| |  || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||    
T  23773163 tttcagatcgtcgtcgatgaagcgccgcagcggctatcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgtttaacatcgtcgt 23773262  T
Q  215 tgtcttgtagagatctggtgttgacg 240  Q
    ||| |||||||| | |||||||||||    
T  23773263 tgtattgtagagctatggtgttgacg 23773288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 69 - 240
Target Start/End: Original strand, 26469940 - 26470112
Alignment:
Q  69 atatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttgg 167  Q
    |||||| || ||||||||| |||||||||| |||||||||||||||||||||| ||  ||| ||| |||||||||| |   |||||||| | ||||||||    
T  26469940 atatatatcccgtgtttttgtgtataaatggaaaatatatttatgggtttcagttcgtcgtcgatgaagcgccgcagcggttgtccttttaaagtcttgg 26470039  T
Q  168 tgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacg 240  Q
    |||||||||||||||| |||||||||||||| |||||||  |||||  ||||||||||| | |||||||||||    
T  26470040 tgtgtgttgattctatcgtggtcactggtttcgttcaacatcgtcgacgtcttgtagagctatggtgttgacg 26470112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 69 - 240
Target Start/End: Original strand, 26546380 - 26546552
Alignment:
Q  69 atatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttgg 167  Q
    |||||| || ||||||||| |||||||||| |||||||||||||||||||||| ||  ||| ||| |||||||||| |   |||||||| | ||||||||    
T  26546380 atatatatcccgtgtttttgtgtataaatggaaaatatatttatgggtttcagttcgtcgtcgatgaagcgccgcagcggttgtccttttaaagtcttgg 26546479  T
Q  168 tgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacg 240  Q
    |||||||||||||||| |||||||||||||| |||||||  |||||  ||||||||||| | |||||||||||    
T  26546480 tgtgtgttgattctatcgtggtcactggtttcgttcaacatcgtcgacgtcttgtagagctatggtgttgacg 26546552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 11275814 - 11276006
Alignment:
Q  18 atgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatatttatgggtt 116  Q
    ||||||||||||||||||| ||| | |    |||| ||||||||||| ||||||||||||| || |||||||| ||||| ||||| |||||||| || ||    
T  11275814 atgatgacaaatatgtgtctcatatct----tttacgtttattagtgataaatatatgtcatgt-tttttatgcataaaagaaaaatatatttagggatt 11275908  T
Q  117 tcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttg 216  Q
    |||||||  ||         ||| ||  |||||||||| ||| |||||||||||| ||||||| | |||||||||||| |||||| ||||| ||| ||||    
T  11275909 tcagatcttcg---------cgcagccgcaactgtcctctcacagtcttggtgtgagttgattatgttgtggtcactgattttgtacaacgtcgttgttg 11275999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 22859647 - 22859752
Alignment:
Q  14 cacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttt-tatgtataaatgaaaatatatttatg 112  Q
    ||||||||| | |||||||||||||||      ||||||||||||||  || | ||||||||||  ||||||| ||||||||||||||||||||||||||    
T  22859647 cacaatgataataaatatgtgtcacat------tttttatgtttattgatgatgaatatatgtccggtgttttttatgtataaatgaaaatatatttatg 22859740  T
Q  113 ggtttcagatca 124  Q
    ||||||| ||||    
T  22859741 ggtttcatatca 22859752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 26469812 - 26469869
Alignment:
Q  12 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatat 74  Q
    ||||||||||||||||||||||||||||||     ||||||||||||| ||||||||||||||    
T  26469812 gccacaatgatgacaaatatgtgtcacatg-----tttttatgtttatcagtggtaaatatat 26469869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 26546284 - 26546341
Alignment:
Q  12 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatat 74  Q
    ||||||||||||||||||||||||||||||     ||||||||||||| ||||||||||||||    
T  26546284 gccacaatgatgacaaatatgtgtcacatg-----tttttatgtttatcagtggtaaatatat 26546341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 12119548 - 12119621
Alignment:
Q  46 ttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttca 119  Q
    |||||||||||||||| || |||||||||||| | || ||||||| ||||||| ||||||||||||| |||||||    
T  12119548 ttttttatgtttattattgataaatatatgtcccatg-ttttatgcataaatgaaaaatatatttataggtttca 12119621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 33435765 - 33435822
Alignment:
Q  16 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtc 77  Q
    ||||||||||||||||||||| ||    | |||||||| ||| |||||||||||||||||||    
T  33435765 caatgatgacaaatatgtgtccca----tattttttatttttgttagtggtaaatatatgtc 33435822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 6433 - 6216
Alignment:
Q  15 acaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatgg 113  Q
    ||||||||||||||||||||||||||||||     |||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| ||    
T  6433 acaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtaaatatatgtcccgtgtttttatgtataaatgaaaaatatatttacgg 6339  T
Q  114 gtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcg 213  Q
    ||||||||||  |||  || | |||| ||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||  ||||    
T  6338 gtttcagatcgtcgtcaatgacgcgctgcagcggctgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggtttcgttaaacgtagtcg 6239  T
Q  214 ttgtcttgtagagatctggtgtt 236  Q
    ||||||||||||| | |||||||    
T  6238 ttgtcttgtagagttatggtgtt 6216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 6000418 - 6000194
Alignment:
Q  12 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatattta 110  Q
    |||||||||||||||||||||||||||||||||     |||||||||| |||||||||||||| || ||||||||| |||||||||||||| ||||||||    
T  6000418 gccacaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtaaatatatatcccgtgtttttgtgtataaatgaaaaatatattta 6000324  T
Q  111 tgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccg 210  Q
    ||||||| || |   ||| ||| |||||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  ||    
T  6000323 tgggttttagtttgtcgtcgatgaagcgccgcagcggctgtccttttagagtcttggtgtgtgttgattctattgtggtcactggtttcgttcaacatcg 6000224  T
Q  211 tcgttgtcttgtagagatctggtgttgacg 240  Q
    |||  ||||||||||| | |||||||||||    
T  6000223 tcgacgtcttgtagagctatggtgttgacg 6000194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 36658048 - 36658272
Alignment:
Q  12 gccacaatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatattta 110  Q
    |||||||||||||||||||||||||||||||||     |||||||||| |||| |||||||||||| |||||||||||||||||||||||| ||||||||    
T  36658048 gccacaatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtgataaatatatgtcccgtgtttttatgtataaatgaaaagtatattta 36658142  T
Q  111 tgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccg 210  Q
    |||||||||||||  | | ||| |||||||||| |  ||||||| | ||||||||| | ||||| ||||||||||||||||||||||| |||||||| ||    
T  36658143 tgggtttcagatcgtcatcgatgaagcgccgcatcggctgtcctgttagagtcttgctttgtgtggattctattgtggtcactggtttcgttcaacgtcg 36658242  T
Q  211 tcgttgtcttgtagagatctggtgttgacg 240  Q
    |  ||||||||||||| | || ||||||||    
T  36658243 ttattgtcttgtagagctatgatgttgacg 36658272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 20361597 - 20361543
Alignment:
Q  48 ttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa 102  Q
    ||||||||||||||||  ||||||||||||  |||||||||||||||| ||||||    
T  20361597 ttttatgtttattagttataaatatatgtcttgtgtttttatgtataagtgaaaa 20361543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 20429409 - 20429347
Alignment:
Q  48 ttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaat-gaaaatatattt 109  Q
    ||||||||||||||||  ||||||||||||  |||||||||||||| | | ||||||||||||    
T  20429409 ttttatgtttattagttataaatatatgtcttgtgtttttatgtatcagtggaaaatatattt 20429347  T

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Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 23660945 - 23661162
Alignment:
Q  16 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaa-tatatttatggg 114  Q
    ||||||||| |||||||||||||||||||     |||||||||| |||| ||||||||| ||  | ||||||||||||||||||||| ||||||||||||    
T  23660945 caatgatgagaaatatgtgtcacatgttt-----ttatgtttatcagtgctaaatatatatcctgcgtttttatgtataaatgaaaaatatatttatggg 23661039  T
Q  115 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgt 214  Q
    ||||||| |    |  || |||||||||| |  |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||   ||||||    
T  23661040 tttcagaccgtgatccatgaagcgccgcagcgcctgtcctttcagggtcttggtgtgtgttgattctattgtggtcactggtttcgttcaagttcgtcgt 23661139  T
Q  215 tgtcttgtagagatctggtgttg 237  Q
    |||||||||||| | ||||||||    
T  23661140 tgtcttgtagagctatggtgttg 23661162  T

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Target: scaffold0527 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 3818 - 3599
Alignment:
Q  16 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatggg 114  Q
    |||||||||||||||||||||||||||||     |||||||||| |||||| |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  3818 caatgatgacaaatatgtgtcacatgttt-----ttatgtttatcagtggtgaatatatgtcccgtgtttttatgtataaatgaaaaatatatttatggg 3724  T
Q  115 tttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgt 214  Q
    ||| |||||  ||| ||| ||||||| || |  ||||||||| |||     ||||||||||||||||||||||||  ||||||| |||||| | ||||||    
T  3723 ttttagatcgtcgtcgatgaagcgccacagcggctgtccttttaga-----ggtgtgtgttgattctattgtggttgctggtttcgttcaaggtcgtcgt 3629  T
Q  215 tgtcttgtagagatctggtgttgacgtgat 244  Q
    |||||| ||||| | |||| ||||||||||    
T  3628 tgtcttatagagctatggtattgacgtgat 3599  T

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Target: scaffold0527; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 244
Target Start/End: Complemental strand, 11834 - 11662
Alignment:
Q  68 aatatatgtcacgtgtttttatgtataaatgaaaa-tatatttatgggtttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttg 166  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||  ||| ||| ||||||| || |  ||||||||| ||||         
T  11834 aatatatgtcccgtgtttttatgtataaatgaaaaatatatttatgggttttagatcgtcgtcgatgaagcgccacagcggctgtccttttagag----- 11740  T
Q  167 gtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgtagagatctggtgttgacgtgat 244  Q
    |||||||||||||||||||||||  ||||||| |||||| | |||||||||||| ||||| | |||| ||||||||||    
T  11739 gtgtgtgttgattctattgtggttgctggtttcgttcaaggtcgtcgttgtcttatagagctatggtattgacgtgat 11662  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 923420 - 923630
Alignment:
Q  16 caatgatgacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaaatatatttatgggt 115  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||||| ||||||||||||  ||| |||||||| ||||||||||||||||||||||     
T  923420 caatgatgacaaatatgt-tcacatgttt--tttttatgtttattagtgataaatatatgtccggtgcttttatgtgtaaatgaaaatatatttatgggg 923516  T
Q  116 ttcagatcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgtt 215  Q
    | ||||| | ||| ||| || |||  || || |||||| ||||  ||||||| |||| || |||| |||||||||| | ||||  ||||||| |||||||    
T  923517 tccagat-atcgtcgatgaaccgc--caccacctgtcccttcatcgtcttggcgtgtcttaattccattgtggtcattagtttcattcaacgtcgtcgtt 923613  T
Q  216 gtcttgtagagatctgg 232  Q
    ||| ||||||| |||||    
T  923614 gtcatgtagagctctgg 923630  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 42773219 - 42773176
Alignment:
Q  47 tttttatgtttattagtggtaaatatatgtcacgtgtttttatg 90  Q
    |||||||||||||||||| |||||||||||| | ||||||||||    
T  42773219 tttttatgtttattagtgataaatatatgtctcatgtttttatg 42773176  T

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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 16180990 - 16180807
Alignment:
Q  23 gacaaatatgtgtcacatgtttcttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatg-aaaatatatttatgggtttcaga 121  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| | |  ||||||||||||    
T  16180990 gacaaatatgtgtcacatgttt--tttttatgtttattagtgataaatatatgtcccgtgtttttatgtataaatgaaaaatgtgtagatgggtttcaga 16180893  T
Q  122 tcaccgttgattaagcgccgcaacaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacg 207  Q
    ||  ||| ||| ||||  ||    |  |||||||||| | | |||||||||||||||||  ||||||||||| |||| ||||||||    
T  16180892 tcgtcgtcgatgaagcatcgtcgtaggtgtcctttcacaattttggtgtgtgttgattccgttgtggtcactagtttcgttcaacg 16180807  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 9004840 - 9004906
Alignment:
Q  46 ttttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatga-aaatatatttat 111  Q
    |||||||||| |||||||| |||||||||||||| |||||||||| |||||||| ||||||||||||    
T  9004840 ttttttatgtctattagtgataaatatatgtcacttgtttttatgcataaatgagaaatatatttat 9004906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 223
Target Start/End: Complemental strand, 32538546 - 32538367
Alignment:
Q  47 tttttatgtttattagtggtaaatatatgtcacgtgtttttatgtataaatgaaa---atatatttatgggtttcagatcaccgttgattaagcgccgca 143  Q
    ||||||||||||||||||   || ||||||| |||||||||||| ||||| ||||   |||| ||| || |||| |||||| ||| | | ||||| |||     
T  32538546 tttttatgtttattagtgaagaacatatgtctcgtgtttttatgcataaaagaaaaatatatttttgtgagttttagatcatcgtcggtgaagcgtcgcc 32538447  T
Q  144 acaactgtcctttcagagtcttggtgtgtgttgattctattgtggtcactggttttgttcaacgccgtcgttgtcttgta 223  Q
     | ||| |||| ||| ||||||||| || ||||||| | || |||||| ||||||  ||||||  |||||||||||||||    
T  32538446 ccgactatcctctcacagtcttggtttgagttgattatgttatggtcattggtttcattcaacatcgtcgttgtcttgta 32538367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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