View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3395-Insertion-1 (Length: 954)
Name: NF3395-Insertion-1
Description: NF3395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3395-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 193 - 761
Target Start/End: Original strand, 4953032 - 4953608
Alignment:
| Q |
193 |
ccgagctaattccaacctactttgtttgtctataaatatgccgaaactgaatttgtcactatatcctaaaacggtataatatcaatgttatattgacgca |
292 |
Q |
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| T |
4953032 |
ccgagctaattccaacctactttgtttgtctataaatatgccgaaactgaatttgtcactatatcctaaaacggtataatatcaatgttaaattgacgca |
4953131 |
T |
|
| Q |
293 |
tcctaaagtgagagtataccttaaaggagttccat-attttttctaaaacaaaaaacggtataagaaaatttcagcactgcaaatttgacatgttggttc |
391 |
Q |
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| T |
4953132 |
tcctaaagtgagagtataccttaaaggagttccataattttttctaaaa-aaaaaacggtataagaaaatttcagcactacaaatttgacatgttggttc |
4953230 |
T |
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| Q |
392 |
ttgtatgcaccgtcaactttctgtccgccatat-tcatgtt---------ttccatcaaatggttaagtcaacaaagcagctttagtggcaaaaaggtta |
481 |
Q |
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| T |
4953231 |
ctgtatgcaccgtcaactttctgtccgccatatatcatgttctttagatcttccatcaaatggttaagtcaacaaagcagctttaatggcaaaaaggtta |
4953330 |
T |
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| Q |
482 |
tgaattaaaaaagatgatggagattggacttaacaacttcaacaacgattttccgtccaaaaaataaagaactttgacaacgatttctttcatagtgata |
581 |
Q |
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| T |
4953331 |
cgaattaaaaaagatgatggagattggacttaacaacttcaacaacgattttccgtccaaaaaat-aagaactttgacaacgatttctttcatagt---- |
4953425 |
T |
|
| Q |
582 |
agataataatcatttgaactttttgcattacctctttccaaaatctacttctaattaatgt-----caataatttgttattttttaggatttactttggc |
676 |
Q |
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| T |
4953426 |
-gataataatcatttgaactttttgcattacctctttccaaaatctacttctaattaatatcttaacaataatttgttattttttaggatttactttggc |
4953524 |
T |
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| Q |
677 |
aaaaataatatgtttattttcacttaccattatcttttgttgctaatacacttatctaaatgttgtataaacatggaaattttga |
761 |
Q |
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| T |
4953525 |
aaaaataatatgtttattttcacttaccattatcttttgttgctaatacacttatctaaatgttgtataaacat-gaaattttga |
4953608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 807 - 951
Target Start/End: Original strand, 4953621 - 4953762
Alignment:
| Q |
807 |
catgaaactgttttttaatatttcttttataaacgtctatgttctttattctcaaaaaagaaactttgttatatttatcaagtcttacgaacagtaaaca |
906 |
Q |
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| T |
4953621 |
catgaaactgtttt-taatatttcttttataaacgtctatgttctttattctcaaaaaagaaactttgttatatttatcaagtcttacgaacagt-aaca |
4953718 |
T |
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| Q |
907 |
aggtgtcctaaaaggtttgtttagtgatttattatccataaaaca |
951 |
Q |
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| T |
4953719 |
a-gtgtcctaaaaggtttgtttagtgatttattatccataaaaca |
4953762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 30349904 - 30350007
Alignment:
| Q |
79 |
aacaaccgtctataccatataacaatttgtatctagttatgaaaacacttatatatatacacacatgttatgaatattttgcaccctctaaaaagttagt |
178 |
Q |
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||||||| |||| |||||| ||||||||||| || ||||||||||||| ||||||| || ||||||||||||| |||||| ||||||| ||||| |
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| T |
30349904 |
aacaaccatctaccccatattacaatttgtatttacacatgaaaacacttacatatatatac----gttatgaatatttggcaccc-ctaaaaaattagt |
30349998 |
T |
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| Q |
179 |
caagatcca |
187 |
Q |
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| T |
30349999 |
caagatcca |
30350007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 27099411 - 27099347
Alignment:
| Q |
73 |
aagcacaacaaccgtctataccatataacaatttgtatctagttatgaaaacacttatatatata |
137 |
Q |
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||||||||||||| |||| ||||| ||||||||||| || | ||||||||||||||||||||| |
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| T |
27099411 |
aagcacaacaaccatctacctcatattacaatttgtatatactcatgaaaacacttatatatata |
27099347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 186
Target Start/End: Complemental strand, 7098312 - 7098173
Alignment:
| Q |
44 |
attcaaaccattgaccttgaa-cagtaattaagcacaacaaccgtctataccatataacaatttgtatctagttatgaaaacacttatatatatacacac |
142 |
Q |
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| T |
7098312 |
attcgaaccattgaccctaaagcaataaataagcacagcaatcatcttcaccagataacaatttgtatttgctcatgaaaacgtttatatatatagaa-- |
7098215 |
T |
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| Q |
143 |
atgttatgaatattttgcaccctctaaaaagttagtcaagatcc |
186 |
Q |
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| T |
7098214 |
--gttatgaatatttggcaccccctaaaaaattagtcaagatcc |
7098173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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