View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3395-Insertion-10 (Length: 213)
Name: NF3395-Insertion-10
Description: NF3395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3395-Insertion-10 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 3398852 - 3399057
Alignment:
| Q |
8 |
aaacctcagacggaagatgcataagaagaaaaagaagtaccgccaaagttcaatgctctgcaccatattttgaaaggatacaaagtgaacatgccaatca |
107 |
Q |
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| T |
3398852 |
aaacctcagacggaagatgcataagaagaaaaagaagtaccgccaaagttcaatgctctgcaccatattttgaaaggatacaaagtgaacatgccaatca |
3398951 |
T |
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| Q |
108 |
cagaaacggtcgaacagattccatgctgcgtcaagtttcttcaagagctcttaaagacaaatgctaatctatctgaggaagaattcatctcactttctag |
207 |
Q |
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| T |
3398952 |
cagaaacggtcgaacagattccatgctgcatcaagtttcttcaagagctcttaaagacaaatgctaatctatctgaggaagaattcatctcactttctag |
3399051 |
T |
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| Q |
208 |
cgaatt |
213 |
Q |
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|||||| |
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| T |
3399052 |
cgaatt |
3399057 |
T |
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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 233268 - 233174
Alignment:
| Q |
101 |
ccaatcacagaaacggtcgaacagattccatgctgcgtcaagtttcttcaagagctcttaaagacaaatgctaatctatctgaggaagaattcat |
195 |
Q |
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| T |
233268 |
ccaatcaaagaaatggtcgcacaaagtccatgttgcatcaagtttcttcaagaattattgaagactgatgccaatctatcggaggaagaactcat |
233174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 17430544 - 17430470
Alignment:
| Q |
127 |
tccatgctgcgtcaagtttcttcaagagctcttaaagacaaatgctaatctatctgaggaagaattcatctcact |
201 |
Q |
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| T |
17430544 |
tccatgctgcatcaagtttcttcaagaactattgaagattaatgccgatctatccgaggaagaactcatatcact |
17430470 |
T |
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