View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3395-Insertion-2 (Length: 955)
Name: NF3395-Insertion-2
Description: NF3395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3395-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 8 - 465
Target Start/End: Original strand, 49247057 - 49247526
Alignment:
| Q |
8 |
gttcaaaccaaaaccgcggacaacaacaatgttgataatgaaatttcaaaaccggaacaaaagcgccatgaaaatgttaaaatggttgttgaggagccca |
107 |
Q |
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| T |
49247057 |
gttcaaaccaaaaccgcggacaacaacaatgttgataatgaaatttcaaaaccggaacaaaagcgccatgaaaatgttaaaatggttgttgaggagccca |
49247156 |
T |
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| Q |
108 |
atgccgttgttgttcctaatgagataacgaatgttaagcaagagaatgcattggagaagaacctg------gaaggtgctgtttctcagaataagacaca |
201 |
Q |
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| T |
49247157 |
atgtcgttgttgttcctaatgagataacgaattttaagcaagagaatgcattggagaagaacctggaaggtgaaggtgatgtttctcagaataagacaca |
49247256 |
T |
|
| Q |
202 |
agaaatcattgttgcagaggagaaaaatgattcattggaaaataaaaatcaacctgaacctgcagaagaagcaaaaatagtaacacaaaatgaaaaaggt |
301 |
Q |
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| T |
49247257 |
agaaatcattgttgcagaggagaaaaatgattcattggaaaataaaaatcaacctgaacctgcagaagaagcaaaaatagtaacggaaaatcaaaaaggt |
49247356 |
T |
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| Q |
302 |
gagaatgatgttgtagattttc------attaatttcaaataagattattaaatatttttaagcattagttgctggttttaaattttaattttctctttg |
395 |
Q |
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| T |
49247357 |
gagaatgatgttgtagattttcattcttattaatttcaaataagattattaaatatttttaagcattagttgctggttttaaattttaattttctctttg |
49247456 |
T |
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| Q |
396 |
catgtttacagaggaagggactttggtcaaggaagttaaagaagnnnnnnnncaagaagaggctttggtt |
465 |
Q |
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| T |
49247457 |
catgtttacagaggaagggactttggtcaaggaagttaaagaagaagaaaaacaagaagaggctttggtt |
49247526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 536 - 721
Target Start/End: Original strand, 49247597 - 49247782
Alignment:
| Q |
536 |
tcaaagacacaaaggaggaagataatgtggccacggaagaagtaaaggctcaggaagaagaaaccgaagaaacggctcaggaagtagaaacaaaagaggt |
635 |
Q |
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| T |
49247597 |
tcaaagacacaaaggaggaagataatgtggccaaggaagaagtaaaggctcaggaagaagaaaccgaagaaacggctcaggaagtagaaacaaaagaggt |
49247696 |
T |
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| Q |
636 |
gcctaaggaagaaggaaccaaggaaatggctccgcaagcagaaaccaaagtaacgactcaggaagaagaaaccaaagtaatggctc |
721 |
Q |
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| T |
49247697 |
gcctaaggaagaaggaaccaaggaaatggctcagcaagcagaaaccaaagtaacgactcaggaagaagaaaccaaagtaatggctc |
49247782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 788 - 954
Target Start/End: Original strand, 49247849 - 49248017
Alignment:
| Q |
788 |
tcaaagagacagctaaggaaga-gaaaccaaagaagcgggttgaggaagagattgtggccaaagaagaagaa-ccaatgtgacaaaagtttcaacttctg |
885 |
Q |
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| T |
49247849 |
tcaaagagacagctaaggaagaagaaaccaaagaagcgg-ttcaggaagagattgtggccaaagaagaagaaaccaatgtgacaaaagtttcaacctctg |
49247947 |
T |
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| Q |
886 |
aagtggatgaacaaaatgatgtcagatctgagcggcaggtatgta-gggctggaacatatcatcgcaaaa |
954 |
Q |
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| T |
49247948 |
aaggtgatgaacaaaatgatatcaaatctgagcagcaggtatgtaggggcttgaacatatcatcgcaaaa |
49248017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 575 - 656
Target Start/End: Original strand, 49247744 - 49247825
Alignment:
| Q |
575 |
aagtaaaggctcaggaagaagaaaccgaagaaacggctcaggaagtagaaacaaaagaggtgcctaaggaagaaggaaccaa |
656 |
Q |
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| T |
49247744 |
aagtaacgactcaggaagaagaaaccaaagtaatggctcaggaagaagaaacaaaagaggtgtctaaggaagaagaaaccaa |
49247825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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