View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3395-Insertion-3 (Length: 982)
Name: NF3395-Insertion-3
Description: NF3395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3395-Insertion-3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 8 - 697
Target Start/End: Original strand, 13850714 - 13851414
Alignment:
| Q |
8 |
caaacatggagccccatgagactttacgcttatttcctaaaatgcgtggtttctcctgttgcacttcaaggacttcaggctttgagccacttggacatga |
107 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
13850714 |
caaacatggagccccatgagaccttacacttatttcctatgatgtgtggtttctcctcttgcacttcaaggacttcaggcttttagccacttggacctag |
13850813 |
T |
|
| Q |
108 |
ggcaat---------------tttctttggtttcacttcagcgaggttgtccacaggttgaatttctacaataagaagnnnnnnnnnnnnnnnnnnnnta |
192 |
Q |
| |
|
| | | |||||| |||| ||||||| |||||| ||||||||||||||||||||||||||| | || |
|
|
| T |
13850814 |
gcccctaggcttctgtgtgtgtttcttcggttccacttcaacgaggtcgtccacaggttgaatttctacaataagca----aaaaaacattaaaaaaata |
13850909 |
T |
|
| Q |
193 |
cgttaatgatttaacaaagtaaaactatgcactatgaaaactagtttgaattacctttctcacgtagctttttatgagtattttcttcttttccttcttt |
292 |
Q |
| |
|
||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13850910 |
cgttagtgatttaaccaagtgaaactatgcactatgaaaactagtttgaattacttttctcacgtagctttttatgagtattttcttcttttccttcttt |
13851009 |
T |
|
| Q |
293 |
gatctcaacaaaagaacgtgaatcaacttgcacatcatttgtctttggaatgctaaacaaggtcggaattactattttcgggtaacattggtgtatctga |
392 |
Q |
| |
|
|||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13851010 |
gatctcaaaaaaagaacgtgcatcagcttgcacatcatttgtctttggaatgctaaacaaggtcggaattactattttcgggtaacattggtgtatctga |
13851109 |
T |
|
| Q |
393 |
gttaaaacaatgtttaagccgcctaataactctcctttaaaagcttctaactgctcttttaatttcacttccatttccttttgtaatctttcttgcagaa |
492 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13851110 |
gttaaaacaatgtttaagccacctaataactctcctttaaaagcttctaactgctcttttaatttcacttccatttccttttgtaatctttcttgcagaa |
13851209 |
T |
|
| Q |
493 |
actgtatctcagtatgagcatttcttttaacttcctcaatagttttttgaatttcaacttgagacttagttccccataagtcagaagctacaacaccttt |
592 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13851210 |
actgtatctcagtatgagcaatccttttaacttcctcaatagttttttgaatttcaacttgagacttagttccccataagtcagaagctacaacaccttt |
13851309 |
T |
|
| Q |
593 |
tccataggtgcgcacataaccatgtctgtcttttcccaagacttgggacagtatatcgtctcgagatgagatttgttctgatgcatttggaagtaaagat |
692 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13851310 |
tccataggtgcgcacataaccatgggtatcttttcccaagacttgggacagtatatcgtctcgagatgagatttgttctgatgcatttggaagtaaagat |
13851409 |
T |
|
| Q |
693 |
agaaa |
697 |
Q |
| |
|
||||| |
|
|
| T |
13851410 |
agaaa |
13851414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 401
Target Start/End: Original strand, 2551587 - 2551992
Alignment:
| Q |
8 |
caaacatggagccccatgagactttacgcttatttcctaaaatgcgtggtttctcctgttgcacttcaaggacttcaggctttgagccacttggacatga |
107 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2551587 |
caaacatggagccccatgagaccttacgcttatttcctatgatgcgtggtttctcctgttgcacttcaaggacttcaggctttgagccacttggacatag |
2551686 |
T |
|
| Q |
108 |
ggcaat---------------tttctttggtttcacttcagcgaggttgtccacaggttgaatttctacaataagaagnnnnnnnnnnnnnnnnnnnnta |
192 |
Q |
| |
|
| | | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
2551687 |
gcccctaggcttctgtgtgtgtttcttcggtttcacttcagcgaggttgtccacaggttgaatttctacaataagca---aaaaaaacattaaaaaaata |
2551783 |
T |
|
| Q |
193 |
cgttaatgatttaacaaagtaaaactatgcactatgaaaactagtttgaattacctttctcacgtagctttttatgagtattttcttcttttccttcttt |
292 |
Q |
| |
|
|||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2551784 |
tgttagtgatttaaccaagtgaaactatgcactatgaaaactagtttgaattacctttctcacgtagctttttatgagtattttcttcttttccttcttt |
2551883 |
T |
|
| Q |
293 |
gatctcaacaaaagaacgtgaatcaacttgcacatcatttgtctttggaatgctaaacaaggtcggaattactattttcgggtaacattggtgtatctga |
392 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2551884 |
gatctcaacaaaagaacgtgcatcagcttgcacatcatttgtctttggaatgctaaacagggtcggaattgctattttcgggtaacattggtgtatctga |
2551983 |
T |
|
| Q |
393 |
gttaaaaca |
401 |
Q |
| |
|
||||||||| |
|
|
| T |
2551984 |
gttaaaaca |
2551992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 401 - 585
Target Start/End: Original strand, 20736911 - 20737095
Alignment:
| Q |
401 |
aatgtttaagccgcctaataactctcctttaaaagcttctaactgctcttttaatttcacttccatttccttttgtaatctttcttgcagaaactgtatc |
500 |
Q |
| |
|
||||||||| | || |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20736911 |
aatgtttaaactgcgtaataactctcctttaaaagcttctaaccgaccttttaatttcacttccatttccttttgcaatctttcttgcagaaactgtatc |
20737010 |
T |
|
| Q |
501 |
tcagtatgagcatttcttttaacttcctcaatagttttttgaatttcaacttgagacttagttccccataagtcagaagctacaa |
585 |
Q |
| |
|
||| | |||||||| |||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20737011 |
tcaatgtgagcattccttttaacttcctcggtagttttttggatttcaacttaagacttagttccccataagtcagaagctacaa |
20737095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 199 - 698
Target Start/End: Original strand, 15515423 - 15515912
Alignment:
| Q |
199 |
tgatttaacaaagtaaaactatgcactatgaaaactagtttgaattacctttctcacgtagctttttatgagtattttcttcttttccttctttgatctc |
298 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
15515423 |
tgatttaacaaagtgaaacaatgcactatgaaaactagtttgaattacccttctcatgtagctttttatgagcattttcttcttttccttctttggtctc |
15515522 |
T |
|
| Q |
299 |
aacaaaagaacgtgaatcaacttgcacatcatttgtctttggaatgctaaacaaggtcggaattactattttcgggtaacattggtgtatctgagttaaa |
398 |
Q |
| |
|
|||||||||||| | |||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
15515523 |
aacaaaagaacgagcatcagcttgcacatcatttgtcttttgaatgctaaacaaggtcggaaacactattttcgggtaacaatggcgtatctgagttaaa |
15515622 |
T |
|
| Q |
399 |
acaatgtttaagccgcctaataactctcctttaaaagcttctaactgctcttttaatttcacttccatttccttttgtaatctttcttgcagaaactgta |
498 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
15515623 |
acaatgtttaa-ctgcctaataactctcctttaaaatcttctaactactcttttaatttcacttccatttctttttgcaatctttcttgcagaaactgta |
15515721 |
T |
|
| Q |
499 |
tctcagtatgagcatttcttttaacttcctcaatagttttttgaatttcaacttgagacttagttccccataagtcagaagctacaacaccttttccata |
598 |
Q |
| |
|
||||| | |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15515722 |
tctcaatgtgagcattccttttaacttcctcaatagttttttggatttcaacttgaggcttagatccccataagtcagaagctacaacaccttttccata |
15515821 |
T |
|
| Q |
599 |
ggtgcgcacataaccatgtctgtcttttcccaagacttgggacagtatatcgtctcgagatgagatttgttctgatgcatttggaagtaaagatagaaat |
698 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15515822 |
ggtgcgcac---------tcggtcttttcccaagacttgggacaatatatcttctcgagatgagttttgttctgatgcatttggaagtaaagatagaaat |
15515912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 529
Target Start/End: Complemental strand, 45354791 - 45354258
Alignment:
| Q |
8 |
caaacatggagccccatgagactttacgcttatttcctaaaatgcgtggtttctcctgttgcacttcaaggacttcaggctttgagccacttggacatga |
107 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45354791 |
caaacatggagccccatgagaccttacgcttatttcctatgatgcgtggtttctcctgttgcacttcaaggacttcaggctttgagccacttggacatag |
45354692 |
T |
|
| Q |
108 |
ggcaat---------------tttctttggtttcacttcagcgaggttgtccacaggttgaatttctacaataagaagnnnnnnnnnnnnnnnnnnnnta |
192 |
Q |
| |
|
| | | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
45354691 |
gcccctaggcttctgtgtgtgtttcttcggtttcacttcagcgaggttgtccacaggttgaatttctacaataagca---aaaaaaacattaaaaaaata |
45354595 |
T |
|
| Q |
193 |
cgttaatgatttaacaaagtaaaactatgcactatgaaaactagtttgaattacctttctcacgtagctttttatgagtattttcttcttttccttcttt |
292 |
Q |
| |
|
|||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45354594 |
tgttagtgatttaaccaagtgaaactatgcactatgaaaactagtttgaattacctttctcacgtagctttttatgagtattttcttcttttccttcttt |
45354495 |
T |
|
| Q |
293 |
gatctcaacaaaagaacgtgaatcaacttgcacatcatttgtctttggaatgctaaacaaggtcggaattactattttcgggtaacattggtgtatctga |
392 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
45354494 |
gatctcaacaaaagaacgtgcatcagcttgcacatcatttgtctttggaatgctaaacagggtcgaaattgctattttcgggtaacattggtgtatctga |
45354395 |
T |
|
| Q |
393 |
gttaaaacaatgtttaagccgcctaataactctcctttaaaagcttctaactgctcttttaatttcacttccatttccttttgtaatctttcttgcagaa |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45354394 |
gttaaaacaatgtttaagccgcctaataactctcctttaaaagcttctaactgctcttttaatttcacttccatttccttttgtaatctttcttgcagaa |
45354295 |
T |
|
| Q |
493 |
actgtatctcagtatgagcatttcttttaacttcctc |
529 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45354294 |
actgtatctcagtatgagcattccttttaacttcctc |
45354258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 5529357 - 5529411
Alignment:
| Q |
21 |
ccatgagactttacgcttatttcctaaaatgcgtggtttctcctgttgcacttca |
75 |
Q |
| |
|
||||||||| |||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
5529357 |
ccatgagaccttacgcttattttctaaaatgtgtggtttctcctgttgcacttca |
5529411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 3e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 1153512 - 1153661
Alignment:
| Q |
18 |
gccccatgagactttacgcttatttcctaaaatgcgtggtttctcctgttgcacttcaaggacttcaggctttgagccacttggacatgaggcaattttc |
117 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1153512 |
gccccatgagaccttatgcttatttcctaaaatgcgtggtttctcctgttgcacttcaaggacttcaggctttgagccacttggacatgatgcaattttc |
1153611 |
T |
|
| Q |
118 |
tttggtttcacttcagcgaggttgtccacaggttgaatttctacaataag |
167 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1153612 |
ttcggtttcacttcagcgaggttgtccacaggttgaatttctacaataag |
1153661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 572 - 697
Target Start/End: Original strand, 1153684 - 1153809
Alignment:
| Q |
572 |
gtcagaagctacaacaccttttccataggtgcgcacataaccatgtctgtcttttcccaagacttgggacagtatatcgtctcgagatgagatttgttct |
671 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1153684 |
gtcagaagctacaacaccttttccataggtgcgcacataaccatgtctgtcttttcccaagacttgggacagtatatcgtctcgagatgagatttgttct |
1153783 |
T |
|
| Q |
672 |
gatgcatttggaagtaaagatagaaa |
697 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1153784 |
gatgcatttggaagtaaagatagaaa |
1153809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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