View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3395-Insertion-4 (Length: 929)

Name: NF3395-Insertion-4
Description: NF3395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3395-Insertion-4
NF3395-Insertion-4
[»] chr6 (27 HSPs)
chr6 (277-929)||(11193752-11194401)
chr6 (156-251)||(11194391-11194486)
chr6 (156-247)||(3541976-3542067)
chr6 (156-247)||(30049646-30049736)
chr6 (156-247)||(30051933-30052023)
chr6 (156-247)||(18203213-18203304)
chr6 (160-226)||(29341064-29341131)
chr6 (156-230)||(18726879-18726953)
chr6 (185-241)||(22889038-22889094)
chr6 (161-247)||(12778630-12778717)
chr6 (246-309)||(34374122-34374185)
chr6 (13-91)||(11190385-11190463)
chr6 (246-308)||(22873500-22873562)
chr6 (156-224)||(11190252-11190320)
chr6 (185-241)||(22873595-22873651)
chr6 (189-241)||(22910581-22910633)
chr6 (256-307)||(18203126-18203177)
chr6 (8-83)||(26571044-26571119)
chr6 (256-306)||(12881715-12881765)
chr6 (258-307)||(12778754-12778803)
chr6 (156-227)||(3535785-3535856)
chr6 (10-82)||(2339170-2339243)
chr6 (203-239)||(12881809-12881845)
chr6 (246-298)||(22888953-22889005)
chr6 (264-298)||(22910496-22910530)
chr6 (185-226)||(33615766-33615807)
chr6 (198-247)||(34374046-34374095)
[»] chr1 (19 HSPs)
chr1 (246-386)||(10927715-10927854)
chr1 (160-247)||(13441861-13441949)
chr1 (160-247)||(23989002-23989090)
chr1 (156-227)||(50857712-50857784)
chr1 (13-82)||(50857569-50857640)
chr1 (161-247)||(10927881-10927968)
chr1 (246-309)||(13441974-13442037)
chr1 (263-309)||(8220189-8220235)
chr1 (160-226)||(23987361-23987428)
chr1 (156-226)||(8930975-8931045)
chr1 (209-247)||(8966022-8966060)
chr1 (160-248)||(40805635-40805724)
chr1 (8-76)||(45085647-45085716)
chr1 (23-91)||(42071456-42071524)
chr1 (189-247)||(31915314-31915375)
chr1 (217-247)||(10926973-10927003)
chr1 (157-226)||(13444254-13444324)
chr1 (300-354)||(31915123-31915177)
chr1 (263-309)||(31915225-31915270)
[»] chr2 (25 HSPs)
chr2 (156-247)||(35681983-35682074)
chr2 (156-247)||(31636064-31636156)
chr2 (156-247)||(27952593-27952685)
chr2 (156-247)||(2165653-2165744)
chr2 (156-226)||(22264186-22264256)
chr2 (21-86)||(22264326-22264391)
chr2 (156-226)||(2155718-2155788)
chr2 (8-91)||(8781399-8781483)
chr2 (156-247)||(22011161-22011253)
chr2 (156-227)||(27956429-27956501)
chr2 (13-82)||(27952443-27952514)
chr2 (13-82)||(27956279-27956350)
chr2 (185-247)||(36648652-36648714)
chr2 (198-247)||(33053197-33053246)
chr2 (156-226)||(15129168-15129239)
chr2 (246-309)||(32162302-32162364)
chr2 (246-309)||(33053108-33053171)
chr2 (156-226)||(33655376-33655447)
chr2 (185-247)||(23457414-23457475)
chr2 (246-308)||(31635975-31636037)
chr2 (185-247)||(36614873-36614935)
chr2 (185-226)||(1517980-1518021)
chr2 (246-309)||(280349-280411)
chr2 (185-230)||(18945741-18945786)
chr2 (156-185)||(31633896-31633925)
[»] scaffold0110 (2 HSPs)
scaffold0110 (156-247)||(45885-45976)
scaffold0110 (156-209)||(46973-47026)
[»] chr8 (22 HSPs)
chr8 (156-247)||(22922119-22922210)
chr8 (165-247)||(26377801-26377884)
chr8 (13-91)||(18180808-18180886)
chr8 (156-247)||(22512316-22512408)
chr8 (475-538)||(39798338-39798401)
chr8 (246-355)||(23573174-23573286)
chr8 (156-220)||(37189623-37189687)
chr8 (156-227)||(18468466-18468537)
chr8 (156-247)||(23573313-23573404)
chr8 (157-228)||(18180957-18181028)
chr8 (247-308)||(2688861-2688922)
chr8 (156-220)||(42891939-42892004)
chr8 (13-82)||(22921975-22922046)
chr8 (13-82)||(42891789-42891860)
chr8 (13-82)||(26150584-26150654)
chr8 (13-82)||(22926773-22926842)
chr8 (10-62)||(22512168-22512220)
chr8 (156-226)||(22926903-22926971)
chr8 (206-245)||(25479680-25479719)
chr8 (185-247)||(2188705-2188767)
chr8 (267-309)||(24577886-24577928)
chr8 (28-82)||(42890291-42890347)
[»] chr3 (13 HSPs)
chr3 (156-247)||(3064007-3064099)
chr3 (160-235)||(43304230-43304306)
chr3 (156-226)||(53012778-53012849)
chr3 (10-91)||(19795139-19795220)
chr3 (156-226)||(43306940-43307011)
chr3 (189-247)||(365853-365911)
chr3 (263-309)||(8536735-8536781)
chr3 (13-65)||(5128821-5128873)
chr3 (263-354)||(3064144-3064234)
chr3 (263-309)||(365954-366000)
chr3 (156-194)||(19795051-19795089)
chr3 (156-218)||(3069143-3069206)
chr3 (13-82)||(39913353-39913424)
[»] chr7 (22 HSPs)
chr7 (156-247)||(1217428-1217520)
chr7 (156-247)||(13882951-13883043)
chr7 (189-247)||(4303186-4303244)
chr7 (246-310)||(13883069-13883135)
chr7 (163-247)||(1786453-1786539)
chr7 (8-82)||(4303343-4303419)
chr7 (198-247)||(11001085-11001134)
chr7 (156-226)||(859424-859495)
chr7 (156-226)||(1220701-1220772)
chr7 (198-247)||(8915432-8915481)
chr7 (13-74)||(13882811-13882872)
chr7 (10-82)||(31577304-31577377)
chr7 (160-226)||(4300306-4300373)
chr7 (246-309)||(11001161-11001224)
chr7 (156-226)||(13886455-13886526)
chr7 (269-318)||(1217568-1217618)
chr7 (185-226)||(3778973-3779014)
chr7 (13-74)||(13886313-13886374)
chr7 (161-235)||(11228510-11228585)
chr7 (246-308)||(4303097-4303159)
chr7 (246-310)||(1369501-1369566)
chr7 (185-226)||(29175573-29175614)
[»] chr4 (16 HSPs)
chr4 (156-247)||(6659598-6659689)
chr4 (156-247)||(13085360-13085454)
chr4 (8-91)||(13085212-13085295)
chr4 (21-91)||(13086268-13086338)
chr4 (768-861)||(47406800-47406887)
chr4 (246-309)||(22716301-22716364)
chr4 (246-309)||(22988853-22988916)
chr4 (156-220)||(22691063-22691128)
chr4 (868-929)||(47407061-47407122)
chr4 (156-247)||(22716391-22716483)
chr4 (156-247)||(22988734-22988826)
chr4 (13-82)||(6659455-6659525)
chr4 (171-213)||(19935271-19935313)
chr4 (589-629)||(1639314-1639354)
chr4 (164-226)||(50519512-50519575)
chr4 (256-294)||(10494626-10494664)
[»] chr5 (13 HSPs)
chr5 (156-247)||(21845158-21845250)
chr5 (160-226)||(19501222-19501288)
chr5 (48-91)||(19497433-19497476)
chr5 (8-65)||(21849091-21849148)
chr5 (13-65)||(40778911-40778963)
chr5 (256-307)||(18252109-18252160)
chr5 (185-226)||(8456642-8456683)
chr5 (156-228)||(21849239-21849312)
chr5 (156-228)||(21857153-21857226)
chr5 (185-226)||(26140144-26140185)
chr5 (246-293)||(21845277-21845324)
chr5 (198-247)||(18252197-18252246)
chr5 (156-185)||(40779055-40779084)
[»] scaffold0054 (4 HSPs)
scaffold0054 (189-241)||(10434-10486)
scaffold0054 (211-247)||(49091-49127)
scaffold0054 (216-247)||(37492-37523)
scaffold0054 (264-298)||(10349-10383)
[»] scaffold0240 (1 HSPs)
scaffold0240 (252-310)||(15691-15749)
[»] scaffold0024 (2 HSPs)
scaffold0024 (203-247)||(145511-145555)
scaffold0024 (300-333)||(144353-144386)


Alignment Details
Target: chr6 (Bit Score: 503; Significance: 0; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 277 - 929
Target Start/End: Complemental strand, 11194401 - 11193752
Alignment:
Q  277 tgaacaagagaccaccctcctggatcccattgaagaaatgtagtagcttgccgaataatttctagatcctccattttacaaatctcaggtaaataataag 376  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11194401 tgaacaagagaccaccctcctggatcccattgaagaaatgcagtagcttgccgaataatttctagatcctccattttacaaatctcaggtaaataataag 11194302  T
Q  377 aatgtcacgaggaaagctcccatcattggttccaactagcattatccaagcaccatgaattaactt-----------ccttcatcttctagagacttttc 465  Q
    |||||||||||| || ||||||| |||||||||||||||||||||||||| |||||||||||||||           |||||||||||||||||||||||    
T  11194301 aatgtcacgagggaaactcccatgattggttccaactagcattatccaagtaccatgaattaacttgaaagtccatgccttcatcttctagagacttttc 11194202  T
Q  466 ctgtatagtgtatgtcaattccttgcattttatgtctttagcttcatattcttttatcttgtccggttgatcacttatgaccacaaacacatcagcatta 565  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11194201 ctgtatagtgtatgtcaattccttgcattttacgtcttgagcttcatattcttttatcttgtccggttgatcacttatgaccacaaacacatcagcatta 11194102  T
Q  566 gcagcaaaattccaagtgccgtacttaggaggtaaagtcttccatttgagtagaattgttggaacagaaatacttcccttatcaatcatttttcggtgta 665  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11194101 gcagcaaaattccaagtgccgtacttaggaggtaaagtcttccatttaagtagaattgttggaacagaaatacttcccttatcaatcatttttcggtgta 11194002  T
Q  666 gaacagccacaacatactgattttgacattcagacatattcacatatttgaagtaattttcatgatacactctatcatcacgactttctttctccaaact 765  Q
    |||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11194001 gaacagcca-------------gtgacattcagacatattcacatatttgaagtaattttcatgatacactctatcatcacgactttctttctccaaact 11193915  T
Q  766 aacatcttcaaagcttatatatattggattgactatcgcatgaatatgtaacatatgtgattggattggactactagcttcccgatgcacccactggcct 865  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  11193914 aacatcttcaaagcttatatatatt-gattgactatcgcatgaatatgtaacatgtgtgattggattggactactagcttcccgatgcacccact-gcct 11193817  T
Q  866 tcggcattccaattttgggggatcccatat-ggctattggagtttcatgaacaacaagtaaatgt 929  Q
    | |||||||||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||    
T  11193816 taggcattccaattttgggggatcgcatatgggctatttgagtttcataaacaacaagtaaatgt 11193752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 156 - 251
Target Start/End: Complemental strand, 11194486 - 11194391
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaagaga 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  11194486 gttctagaaaattactaagatttggctaaaataaaatactactaaattactaagaaaactctcctacatcagtctcctccacctctgaacaagaga 11194391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 3542067 - 3541976
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||||||| | ||||||||| |||||||||||||||   ||| ||||||| || ||||||||||||||||||||||||||||||||||    
T  3542067 gttctagaaaatcattaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatcagtctcctccacctctgaagaa 3541976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 30049736 - 30049646
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||||||| ||||| |||||||||||| |||||||||  ||| ||||||| || ||||||||||||||||||||||||||||||||||    
T  30049736 gttctagaaaatcactaaaatttggctaaaa-aaaatactataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaa 30049646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 30052023 - 30051933
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||||||| ||||| |||||||||||| |||||||||  ||| ||||||| || ||||||||||||||||||||||||||||||||||    
T  30052023 gttctagaaaatcactaaaatttggctaaaa-aaaatactataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaa 30051933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 18203304 - 18203213
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaata-aaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||||||||||||||||||| |||||  | ||||||||  ||| |||| ||||| ||||||||||||||||||||||||||||||||||    
T  18203304 gttctagaaaattactaagatttgactaaataataaatactataaaattactgagaaa-ccctcctacatcagtctcctccacctctgaagaa 18203213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 29341064 - 29341131
Alignment:
Q  160 tagaaaattactaagatttggctaaaata-aaatactactaaactactaagaaaaccctcctacatca 226  Q
    ||||||||||||||||||||||||||| | ||||||||||||| |||||| |||||||||||||||||    
T  29341064 tagaaaattactaagatttggctaaaaaataaatactactaaattactaataaaaccctcctacatca 29341131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 18726953 - 18726879
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcctacatcagtct 230  Q
    |||||||||||| ||||||||||||||||||||||| ||||  ||| |||||| ||||||||||| |||||||||    
T  18726953 gttctagaaaatgactaagatttggctaaaataaaaaactataaaattactaaaaaaaccctcctgcatcagtct 18726879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 22889094 - 22889038
Alignment:
Q  185 aataaaatactactaaactactaagaaaaccctcctacatcagtctcctccacctct 241  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  22889094 aataaaatactaataaattactaagaaaaccctcctacatcagtctcatccacctct 22889038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 12778630 - 12778717
Alignment:
Q  161 agaaaattactaagatttggctaaaataaaa-tactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    ||||||||| ||| ||| ||||||||||||| |||||   || ||||| |||||||||| ||||||||||||||||||||||||||||    
T  12778630 agaaaattattaaaattgggctaaaataaaaatactatagaaatactatgaaaaccctcttacatcagtctcctccacctctgaagaa 12778717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 34374122 - 34374185
Alignment:
Q  246 aagagattctcatgcacgttgactcctccaatgaacaagagaccaccctcctggatcccattga 309  Q
    ||||||||| |||||| |||||||| |||||||||||||||||||| ||| |||||||||||||    
T  34374122 aagagattcccatgcatgttgactcttccaatgaacaagagaccactctcttggatcccattga 34374185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 11190463 - 11190385
Alignment:
Q  13 aatccacgagaattgagagaaaatattgaataactttattgaatcaaaaagtgcctcttaggctgcataatgttgtgtt 91  Q
    ||||||| |||||||||||||||| | |||||| ||||||||||||||||||| || ||| ||| ||||||||| ||||    
T  11190463 aatccaccagaattgagagaaaatctcgaataattttattgaatcaaaaagtgtcttttaagctacataatgttctgtt 11190385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 22873562 - 22873500
Alignment:
Q  246 aagagattctcatgcacgttgactcctccaatgaacaagagaccaccctcctggatcccattg 308  Q
    ||||| ||| ||||||  ||||||||||||||||||||||||| |||||||||||||||||||    
T  22873562 aagagcttcccatgcatattgactcctccaatgaacaagagacaaccctcctggatcccattg 22873500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 11190320 - 11190252
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcctacat 224  Q
    |||||||||||||||| || |||| |||||||||||||||| |||| || |||||||||||| ||||||    
T  11190320 gttctagaaaattacttaggtttgactaaaataaaatactattaaattattaagaaaacccttctacat 11190252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 22873651 - 22873595
Alignment:
Q  185 aataaaatactactaaactactaagaaaaccctcctacatcagtctcctccacctct 241  Q
    |||||||||||| |||| || |||||||||||||||||||||||||| |||||||||    
T  22873651 aataaaatactaataaattattaagaaaaccctcctacatcagtctcatccacctct 22873595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 22910633 - 22910581
Alignment:
Q  189 aaatactactaaactactaagaaaaccctcctacatcagtctcctccacctct 241  Q
    |||||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  22910633 aaatactaataaattactaagaaaaccctcctacatcagtctcatccacctct 22910581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 256 - 307
Target Start/End: Complemental strand, 18203177 - 18203126
Alignment:
Q  256 catgcacgttgactcctccaatgaacaagagaccaccctcctggatcccatt 307  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||||||    
T  18203177 catgcatgttgactcctcgaatgaacaagagaccaccctcctagatcccatt 18203126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 26571119 - 26571044
Alignment:
Q  8 ttcgaaatccacgagaattgagagaaaatattgaataactttattgaatcaaaaagtgcctcttaggctgcataat 83  Q
    |||| ||||| | |||||||||||||||| | |||||| |||||||||| || ||||| |||||||||||||||||    
T  26571119 ttcggaatccgctagaattgagagaaaatctcgaataattttattgaatgaataagtggctcttaggctgcataat 26571044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 12881765 - 12881715
Alignment:
Q  256 catgcacgttgactcctccaatgaacaagagaccaccctcctggatcccat 306  Q
    |||||| ||||||| || |||||||||||||||||||||||||||||||||    
T  12881765 catgcatgttgacttcttcaatgaacaagagaccaccctcctggatcccat 12881715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 258 - 307
Target Start/End: Original strand, 12778754 - 12778803
Alignment:
Q  258 tgcacgttgactcctccaatgaacaagagaccaccctcctggatcccatt 307  Q
    |||| |||||||||||||||||||||||||| |||||| |||||||||||    
T  12778754 tgcatgttgactcctccaatgaacaagagacaaccctcttggatcccatt 12778803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 3535856 - 3535785
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcctacatcag 227  Q
    |||||||||||| | ||||||||| |||||||||||||||   ||| ||||||| || ||||||||||||||    
T  3535856 gttctagaaaatcattaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatcag 3535785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 2339170 - 2339243
Alignment:
Q  10 cgaaatccacgagaattgagagaaaatattgaataactttattgaatcaaaaag-tgcctcttaggctgcataa 82  Q
    |||||||||| |||||||||||||||   |  |||| |||||||||| |||||| |||||||||||||||||||    
T  2339170 cgaaatccaccagaattgagagaaaagtctcgataattttattgaatgaaaaagatgcctcttaggctgcataa 2339243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 12881845 - 12881809
Alignment:
Q  203 tactaagaaaaccctcctacatcagtctcctccacct 239  Q
    ||||||| |||||||||||||||||||||||||||||    
T  12881845 tactaaggaaaccctcctacatcagtctcctccacct 12881809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 22889005 - 22888953
Alignment:
Q  246 aagagattctcatgcacgttgactcctccaatgaacaagagaccaccctcctg 298  Q
    ||||| ||| ||||||  ||||||||||||||||||||||||| |||||||||    
T  22889005 aagagcttcccatgcatattgactcctccaatgaacaagagacaaccctcctg 22888953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 22910530 - 22910496
Alignment:
Q  264 ttgactcctccaatgaacaagagaccaccctcctg 298  Q
    ||||||||||||||||||||||||| |||||||||    
T  22910530 ttgactcctccaatgaacaagagacaaccctcctg 22910496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 33615766 - 33615807
Alignment:
Q  185 aataaaatactactaaactactaagaaaaccctcctacatca 226  Q
    ||||||||||||||||| ||||| | ||||||||||||||||    
T  33615766 aataaaatactactaaattactagggaaaccctcctacatca 33615807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 34374046 - 34374095
Alignment:
Q  198 taaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||| ||||||| |||||||| ||||| |||||||||||| |||||||||    
T  34374046 taaaatactaaggaaaccctcttacattagtctcctccacatctgaagaa 34374095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 1e-37; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 246 - 386
Target Start/End: Complemental strand, 10927854 - 10927715
Alignment:
Q  246 aagagattctcatgcacgttgactcctccaatgaacaagagaccaccctcctggatcccattgaagaaatgtagtagcttgccgaataatttctagatcc 345  Q
    ||||| |||||||||| |||||||| | |||| ||||||||||| ||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||    
T  10927854 aagagtttctcatgcaagttgactcttacaataaacaagagacc-ccctcctagatcccattgaagaaatgtagtaacatgccgaatactttctagatcc 10927756  T
Q  346 tccattttacaaatctcaggtaaataataagaatgtcacga 386  Q
    ||||||||||||| |||||| ||||||||||| || |||||    
T  10927755 tccattttacaaaactcaggcaaataataagagtgacacga 10927715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 13441861 - 13441949
Alignment:
Q  160 tagaaaattactaagatttggctaaaata-aaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    ||||||||||||| ||||||||||||  | ||||||||||||| |||||| |||||||| || ||||||||||||||||||||||||||    
T  13441861 tagaaaattactatgatttggctaaataataaatactactaaattactaacaaaacccttctgcatcagtctcctccacctctgaagaa 13441949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 23989090 - 23989002
Alignment:
Q  160 tagaaaattactaagatttggctaaaataaaa-tactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||||||||| ||||||||||||||||| |||||  ||| ||||||| |||||||||||||| |||||||| |||||||||||||    
T  23989090 tagaaaattactaaaatttggctaaaataaaaatactatgaaattactaaggaaaccctcctacattagtctcctacacctctgaagaa 23989002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 50857712 - 50857784
Alignment:
Q  156 gttctagaaaattactaagatttggctaaa-ataaaatactactaaactactaagaaaaccctcctacatcag 227  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||| |||||| ||||||||||| ||||||    
T  50857712 gttctagaaaattactaagatttggctaaataataaatactactaaattactaataaaaccctcctgcatcag 50857784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 50857569 - 50857640
Alignment:
Q  13 aatccacgagaattgagagaaaatattgaataactttattgaatcaaaaa--gtgcctcttaggctgcataa 82  Q
    ||||||| |||||||||||||||| | |||||| ||||||| ||||||||  ||||||||||||||||||||    
T  50857569 aatccaccagaattgagagaaaatctcgaataattttattgtatcaaaaagtgtgcctcttaggctgcataa 50857640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 10927968 - 10927881
Alignment:
Q  161 agaaaattactaagatttggctaaaataaaa-tactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||||||||  ||| || ||||||||| |||||  ||| ||||||| ||||||||||||| ||||||||||||| |||||||||    
T  10927968 agaaaattactaaattttagccaaaataaaaatactataaaattactaaggaaaccctcctacaacagtctcctccacttctgaagaa 10927881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 13441974 - 13442037
Alignment:
Q  246 aagagattctcatgcacgttgactcctccaatgaacaagagaccaccctcctggatcccattga 309  Q
    ||||| ||| |||||| ||||||||||||||||| ||||||| || ||||||||||||||||||    
T  13441974 aagagcttcccatgcatgttgactcctccaatgagcaagagatcatcctcctggatcccattga 13442037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 8220235 - 8220189
Alignment:
Q  263 gttgactcctccaatgaacaagagaccaccctcctggatcccattga 309  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||    
T  8220235 gttgactcctccagtgaacaagagacgaccctcctggatcccattga 8220189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 23987428 - 23987361
Alignment:
Q  160 tagaaaattactaagatttggctaaaat-aaaatactactaaactactaagaaaaccctcctacatca 226  Q
    |||||||||||||| |||| |||||||| |||||||||  ||| ||||||| ||||||||||||||||    
T  23987428 tagaaaattactaaaatttagctaaaataaaaatactatgaaattactaaggaaaccctcctacatca 23987361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 8931045 - 8930975
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcctacatca 226  Q
    |||||||||||| ||||||||||| |||||||||||||||   ||| ||||||| ||  ||||||||||||    
T  8931045 gttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagtcctcctacatca 8930975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 8966022 - 8966060
Alignment:
Q  209 gaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  8966022 gaaaaccttcctacatcagtctcctccacctctgaagaa 8966060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 40805724 - 40805635
Alignment:
Q  160 tagaaaattactaagatttggctaaaataaaa-tactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaag 248  Q
    |||||| ||||||| ||| | ||||||||||| |||||| ||| || |||| ||||  ||||||||||||||||||||||| | ||||||    
T  40805724 tagaaagttactaaaattagactaaaataaaaatactacaaaattaataaggaaactatcctacatcagtctcctccacctttaaagaag 40805635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 45085716 - 45085647
Alignment:
Q  8 ttcgaaatccacgagaattgagagaaaatat-tgaataactttattgaatcaaaaagtgcctcttaggct 76  Q
    |||||||||||| |||||||||||||||  | | ||||| |||||||||| ||||| |||||||||||||    
T  45085716 ttcgaaatccaccagaattgagagaaaagttctcaataagtttattgaatgaaaaactgcctcttaggct 45085647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 42071456 - 42071524
Alignment:
Q  23 aattgagagaaaatattgaataactttattgaatcaaaaagtgcctcttaggctgcataatgttgtgtt 91  Q
    |||||||||| ||| | |||||| ||||||||||  |||| ||| ||||||||||||||||||| ||||    
T  42071456 aattgagagagaatctcgaataattttattgaattcaaaaatgcatcttaggctgcataatgttatgtt 42071524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 31915375 - 31915314
Alignment:
Q  189 aaatactactaaactactaagaaaaccctcctacatcagtctc---ctccacctctgaagaa 247  Q
    ||||||||||||| |||||| ||||||||| | ||||||||||   ||||||||||||||||    
T  31915375 aaatactactaaattactaataaaaccctcatgcatcagtctcctcctccacctctgaagaa 31915314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 10927003 - 10926973
Alignment:
Q  217 tcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||||||||||||||||||||||||||    
T  10927003 tcctacatcagtctcctccacctctgaagaa 10926973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 226
Target Start/End: Original strand, 13444254 - 13444324
Alignment:
Q  157 ttctagaaaattactaagatttggctaaaata-aaatactactaaactactaagaaaaccctcctacatca 226  Q
    |||| |||||||||||| |||||||||||  | ||||||||||||| |||||| |||| |||||| |||||    
T  13444254 ttcttgaaaattactaaaatttggctaaataataaatactactaaattactaataaaatcctcctgcatca 13444324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 300 - 354
Target Start/End: Complemental strand, 31915177 - 31915123
Alignment:
Q  300 atcccattgaagaaatgtagtagcttgccgaataatttctagatcctccatttta 354  Q
    ||||||||||||||||| |||||| ||| ||||| |||||||||||  |||||||    
T  31915177 atcccattgaagaaatgcagtagcatgctgaatattttctagatccatcatttta 31915123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 31915270 - 31915225
Alignment:
Q  263 gttgactcctccaatgaacaagagaccaccctcctggatcccattga 309  Q
    |||||||||||||||||||||||||| | |||||||||||| |||||    
T  31915270 gttgactcctccaatgaacaagagacta-cctcctggatccgattga 31915225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 1e-34; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 35682074 - 35681983
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  35682074 gttctagaaaattactaagatttggctaaaataaaatactataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaa 35681983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 31636156 - 31636064
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaata-aaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  31636156 gttctagaaaattactaagatttggctaaataataaatactactaaattactaataaaaccctcctacatcagtctcctccacctctgaagaa 31636064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 27952593 - 27952685
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaata-aaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    ||||||||||||||||||||||||| ||||  | ||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||    
T  27952593 gttctagaaaattactaagatttggataaataataaatactactaaattattaataaaaccctcctacatcagtctcctccacctctgaagaa 27952685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 2165744 - 2165653
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||| ||||| ||||||||||| ||||||||||||||||  ||| ||||||| |||| ||||||||||||||||||||||||||||||||    
T  2165744 gttctaaaaaatcactaagatttgactaaaataaaatactataaaattactaaggaaactctcctacatcagtctcctccacctctgaagaa 2165653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 22264256 - 22264186
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcctacatca 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| || |||||    
T  22264256 gttctagaaaattactaagatttggctaaaataaaatactactaaattactaagaaaatccttctgcatca 22264186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 22264391 - 22264326
Alignment:
Q  21 agaattgagagaaaatattgaataactttattgaatcaaaaagtgcctcttaggctgcataatgtt 86  Q
    |||||||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||||||||    
T  22264391 agaattgagataaaatctcgaataattttattgaatcaaaaagtgcctcttaggctgcataatgtt 22264326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 2155788 - 2155718
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcctacatca 226  Q
    |||||||||||| ||||||||||| ||||||||||||||||  ||| ||||||| ||||||||||||||||    
T  2155788 gttctagaaaatcactaagatttgactaaaataaaatactataaaattactaaggaaaccctcctacatca 2155718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 8781483 - 8781399
Alignment:
Q  8 ttcgaaatccacgagaattgagagaaaatattgaataactttattgaat-caaaaagtgcctcttaggctgcataatgttgtgtt 91  Q
    |||||||||||| ||||||||||| |||| | |||||| ||||||||||  ||||||||||||||||||||||||| ||| ||||    
T  8781483 ttcgaaatccaccagaattgagagtaaatctcgaataattttattgaatgaaaaaagtgcctcttaggctgcataacgttctgtt 8781399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 22011253 - 22011161
Alignment:
Q  156 gttctagaaaattactaagatttggctaaa-ataaaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||| ||   | ||||||||||| ||||| |||||||||||||| |||||    
T  22011253 gttctagaaaattactaagatttggctaaataataaatactactaaattaaagataaaaccctcctgcatcactctcctccacctctaaagaa 22011161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 27956429 - 27956501
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaata-aaatactactaaactactaagaaaaccctcctacatcag 227  Q
    ||||||||||||||||||||||||| ||||  | ||||||||||||| |||||| ||||||||||||||||||    
T  27956429 gttctagaaaattactaagatttggataaataataaatactactaaattactaataaaaccctcctacatcag 27956501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 27952443 - 27952514
Alignment:
Q  13 aatccacgagaattgagagaaaatattgaataactttattgaatcaaaaa--gtgcctcttaggctgcataa 82  Q
    ||||||| |||||||||||||||| | |||||| ||||||||||||||||  |||||||||||||| |||||    
T  27952443 aatccaccagaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgcctcttaggctacataa 27952514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 27956279 - 27956350
Alignment:
Q  13 aatccacgagaattgagagaaaatattgaataactttattgaatcaaaaa--gtgcctcttaggctgcataa 82  Q
    ||||||| |||||||||||||||| | |||||| ||||||||||||||||  |||||||||||||| |||||    
T  27956279 aatccaccagaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgcctcttaggctacataa 27956350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 36648714 - 36648652
Alignment:
Q  185 aataaaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||||||| |||| ||||||| |||||||||||||| ||||||||||| || |||||||    
T  36648714 aataaaatactaataaattactaaggaaaccctcctacatgagtctcctccatctatgaagaa 36648652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 33053246 - 33053197
Alignment:
Q  198 taaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||||||||    
T  33053246 taaaatactaaggaaacccttctacatcagtctcctccacctctgaagaa 33053197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 15129239 - 15129168
Alignment:
Q  156 gttctagaaaattactaagatttggctaaa-ataaaatactactaaactactaagaaaaccctcctacatca 226  Q
    ||||||||||||||||||||||||| |||| |  ||||||||||||| || ||| ||||||||||| |||||    
T  15129239 gttctagaaaattactaagatttggttaaataataaatactactaaattattaataaaaccctcctgcatca 15129168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 32162302 - 32162364
Alignment:
Q  246 aagagattctcatgcacgttgactcctccaatgaacaagagaccaccctcctggatcccattga 309  Q
    ||||| ||| |||||| |||||||| || ||||||||||||||||||||||| |||||||||||    
T  32162302 aagagcttcccatgcatgttgactc-tctaatgaacaagagaccaccctccttgatcccattga 32162364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 33053171 - 33053108
Alignment:
Q  246 aagagattctcatgcacgttgactcctccaatgaacaagagaccaccctcctggatcccattga 309  Q
    ||||| ||||||| || || |||||||| ||| |||||||||||||||||||| ||||||||||    
T  33053171 aagagcttctcattcatgtcgactcctctaataaacaagagaccaccctcctgaatcccattga 33053108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 33655447 - 33655376
Alignment:
Q  156 gttctagaaaattactaagatttggctaaa-ataaaatactactaaactactaagaaaaccctcctacatca 226  Q
    |||||||||||||||||||||||||||||| |  | ||||||||||| ||| || ||||||||||| |||||    
T  33655447 gttctagaaaattactaagatttggctaaataatagatactactaaattaccaataaaaccctcctgcatca 33655376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 23457475 - 23457414
Alignment:
Q  185 aataaaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||| | || ||| ||||||||||||| ||||||||||||| |||||||||||||||||    
T  23457475 aataaaatgccacaaaattactaagaaaacc-tcctacatcagtcgcctccacctctgaagaa 23457414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 31636037 - 31635975
Alignment:
Q  246 aagagattctcatgcacgttgactcctccaatgaacaagagaccaccctcctggatcccattg 308  Q
    ||||| ||| |||||| ||||||||||||||||||||||||  ||||| || |||||||||||    
T  31636037 aagagtttcccatgcatgttgactcctccaatgaacaagagcacacccacccggatcccattg 31635975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 36614935 - 36614873
Alignment:
Q  185 aataaaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||||||| |||| ||||||| |||||||||||| | ||||||||||| || |||||||    
T  36614935 aataaaatactaataaattactaaggaaaccctcctacgtgagtctcctccatctatgaagaa 36614873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 1518021 - 1517980
Alignment:
Q  185 aataaaatactactaaactactaagaaaaccctcctacatca 226  Q
    ||||||||||||||||| |||||||||||||||||| |||||    
T  1518021 aataaaatactactaaattactaagaaaaccctcctgcatca 1517980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 280349 - 280411
Alignment:
Q  246 aagagattctcatgcacgttgactcctccaatgaacaagagaccaccctcctggatcccattga 309  Q
    ||||| ||| |||||| ||||| ||||||||||||| |||||||| ||| ||||||||||||||    
T  280349 aagagcttcacatgcatgttgaatcctccaatgaac-agagaccatccttctggatcccattga 280411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 18945786 - 18945741
Alignment:
Q  185 aataaaatactactaaactactaagaaaaccctcctacatcagtct 230  Q
    ||||||||||||||||| |||||||||||  ||||||||| |||||    
T  18945786 aataaaatactactaaattactaagaaaattctcctacataagtct 18945741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 185
Target Start/End: Complemental strand, 31633925 - 31633896
Alignment:
Q  156 gttctagaaaattactaagatttggctaaa 185  Q
    ||||||||||||||||||||||||||||||    
T  31633925 gttctagaaaattactaagatttggctaaa 31633896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 45885 - 45976
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||||||| ||||| ||||||||||||||||||||||  ||| ||||||| || ||||||||||||||||||||||||||||||||||    
T  45885 gttctagaaaatcactaaaatttggctaaaataaaatactataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaa 45976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 46973 - 47026
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaag 209  Q
    |||||||||||| ||||| ||||| ||||||||||||||||  ||| |||||||    
T  46973 gttctagaaaatcactaaaatttgactaaaataaaatactataaaattactaag 47026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 2e-27; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 22922119 - 22922210
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||||||| ||||||||||| ||||||||||||||||  ||| ||||||| || ||||||||||||||||||||||||||||||||||    
T  22922119 gttctagaaaatcactaagatttgactaaaataaaatactataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaa 22922210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 165 - 247
Target Start/End: Complemental strand, 26377884 - 26377801
Alignment:
Q  165 aattactaagatttggctaaaataaaat-actactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    ||||||||| ||| |||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  26377884 aattactaaaattaggctaaaataaaattactaataaattactaagaaaaccctcctacatcagtctcctccacctttgaagaa 26377801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 18180808 - 18180886
Alignment:
Q  13 aatccacgagaattgagagaaaatattgaataactttattgaatcaaaaagtgcctcttaggctgcataatgttgtgtt 91  Q
    ||||||| |||||||||||||||| | |||||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  18180808 aatccaccagaattgagagaaaatctcgaataattttattgaatcaaaaagtgcctcttaggctacataatgttctgtt 18180886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 22512316 - 22512408
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaata-aaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    ||||||||||||||||||||||| ||||||  | ||||||||||||| |||||| ||||| ||||| |||||||||||||||||||| |||||    
T  22512316 gttctagaaaattactaagatttagctaaataataaatactactaaattactaataaaactctcctgcatcagtctcctccacctctaaagaa 22512408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 475 - 538
Target Start/End: Original strand, 39798338 - 39798401
Alignment:
Q  475 gtatgtcaattccttgcattttatgtctttagcttcatattcttttatcttgtccggttgatca 538  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  39798338 gtatgccaattccttgcattttatgtcttgagcttcatattcttttatcttgtcccgttgatca 39798401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 246 - 355
Target Start/End: Complemental strand, 23573286 - 23573174
Alignment:
Q  246 aagagattctcatgcacgttgactcctccaatgaacaagagaccacc---ctcctggatcccattgaagaaatgtagtagcttgccgaataatttctaga 342  Q
    ||||| ||| |||||| ||||||||||||||||||||| ||||||||   ||||||| |||||||||| |||||| ||||| ||||| ||| ||||||||    
T  23573286 aagagcttcccatgcatgttgactcctccaatgaacaaaagaccaccaccctcctggttcccattgaaaaaatgtggtagcatgccggatactttctaga 23573187  T
Q  343 tcctccattttac 355  Q
    |||  ||||||||    
T  23573186 tccatcattttac 23573174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 37189687 - 37189623
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcct 220  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  37189687 gttctaaaaagttactaagatttggctaaaataaaatactactaaattactaagaaaactctcct 37189623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 18468537 - 18468466
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcctacatcag 227  Q
    ||||||||||||||||||||||||| |||||||||||||||  ||| ||||||| || ||||||||||||||    
T  18468537 gttctagaaaattactaagatttggttaaaataaaatactataaaattactaaggaagccctcctacatcag 18468466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 23573404 - 23573313
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaata-aaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    ||||||||||||||||||||||||| ||||  | ||||||||  ||| |||||||||| |||| |||||| ||||||||||||||||||||||    
T  23573404 gttctagaaaattactaagatttggttaaataataaatactataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaa 23573313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 18180957 - 18181028
Alignment:
Q  157 ttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcctacatcagt 228  Q
    ||||| ||||||| |||||||||  | |||||||||||||||||| ||||||||||||  ||||||||||||    
T  18180957 ttctaaaaaattattaagatttgagttaaataaaatactactaaattactaagaaaactgtcctacatcagt 18181028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 247 - 308
Target Start/End: Complemental strand, 2688922 - 2688861
Alignment:
Q  247 agagattctcatgcacgttgactcctccaatgaacaagagaccaccctcctggatcccattg 308  Q
    |||| ||| |||||| |||||||||||||||||||| |||| ||||||| ||||||||||||    
T  2688922 agagtttcccatgcatgttgactcctccaatgaacatgagatcaccctcatggatcccattg 2688861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 42891939 - 42892004
Alignment:
Q  156 gttctagaaaattactaagatttggctaaa-ataaaatactactaaactactaagaaaaccctcct 220  Q
    ||||||||||||||||||||||||| |||| |  ||||||||||||| |||||| |||||||||||    
T  42891939 gttctagaaaattactaagatttggttaaataataaatactactaaattactaataaaaccctcct 42892004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 22921975 - 22922046
Alignment:
Q  13 aatccacgagaattgagagaaaatattgaataactttattgaatcaaaa--agtgcctcttaggctgcataa 82  Q
    ||||||| |||||||||||||||| | |||||| |||||||||||||||   ||| ||||||||||||||||    
T  22921975 aatccaccagaattgagagaaaatctcgaataattttattgaatcaaaaggtgtgtctcttaggctgcataa 22922046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 42891789 - 42891860
Alignment:
Q  13 aatccacgagaattgagagaaaatattgaataactttattgaatcaaaaa--gtgcctcttaggctgcataa 82  Q
    ||||||| |||||||||||||||| |  ||||| ||||||||||||||||  |||||||||||||| |||||    
T  42891789 aatccaccagaattgagagaaaatctcaaataattttattgaatcaaaaagtgtgcctcttaggctacataa 42891860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 26150654 - 26150584
Alignment:
Q  13 aatccacgagaattgagagaaaa-tattgaataactttattgaatcaaaaagtgcctcttaggctgcataa 82  Q
    ||||||| ||||||||||||||| | | |||||  |||||||||| ||||||||||||||| |||||||||    
T  26150654 aatccaccagaattgagagaaaagtctcgaatatttttattgaatgaaaaagtgcctcttaagctgcataa 26150584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 22926773 - 22926842
Alignment:
Q  13 aatccacgagaattgagagaaaatattgaataactttattgaatcaaaaagtgcctcttaggctgcataa 82  Q
    ||||||| |||||||||||||||| | |||||  |||||||||| |||  ||| ||||||||||||||||    
T  22926773 aatccaccagaattgagagaaaatctcgaatatttttattgaattaaattgtgtctcttaggctgcataa 22926842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 22512168 - 22512220
Alignment:
Q  10 cgaaatccacgagaattgagagaaaatattgaataactttattgaatcaaaaa 62  Q
    |||||||||| |||||||||||||||| | |||||| |||||||||| |||||    
T  22512168 cgaaatccaccagaattgagagaaaatctcgaataattttattgaataaaaaa 22512220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 22926903 - 22926971
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcctacatca 226  Q
    |||||||||||| |||||  |||| ||||||||||||||||  ||| ||||||| || |||||||||||||    
T  22926903 gttctagaaaatcactaa--tttgactaaaataaaatactataaaattactaaggaagccctcctacatca 22926971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 25479680 - 25479719
Alignment:
Q  206 taagaaaaccctcctacatcagtctcctccacctctgaag 245  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  25479680 taagaaaacactcctacatcagtctcctccacctccgaag 25479719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 2188705 - 2188767
Alignment:
Q  185 aataaaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||||||| |||| ||||||| ||||| |||||| | ||||||||||| || |||||||    
T  2188705 aataaaatactaataaattactaaggaaaccttcctacgtgagtctcctccatctatgaagaa 2188767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 24577886 - 24577928
Alignment:
Q  267 actcctccaatgaacaagagaccaccctcctggatcccattga 309  Q
    ||||||||||| |||||||||||| |||||| |||||||||||    
T  24577886 actcctccaataaacaagagaccatcctcctagatcccattga 24577928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 42890347 - 42890291
Alignment:
Q  28 agagaaaatattgaataactttattgaatcaaaaa--gtgcctcttaggctgcataa 82  Q
    ||||||||| | |||||| ||||||||||||||||  |||||||||||||| |||||    
T  42890347 agagaaaatctcgaataattttattgaatcaaaaagtgtgcctcttaggctacataa 42890291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 1e-25; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 3064007 - 3064099
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaata-aaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||| |||||||||||||||||||||  | ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||    
T  3064007 gttctagagaattactaagatttggctaaataataaatactactaaattactaacaaaaccctcctgcatcagtctcctccacctctgaagaa 3064099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 43304230 - 43304306
Alignment:
Q  160 tagaaaattactaagatttggctaaaata-aaatactactaaactactaagaaaaccctcctacatcagtctcctcc 235  Q
    ||||||||||||||||||||||||||  | |||| |||||||| |||||| ||||||||||| ||||||||||||||    
T  43304230 tagaaaattactaagatttggctaaataataaatgctactaaattactaataaaaccctcctgcatcagtctcctcc 43304306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 53012849 - 53012778
Alignment:
Q  156 gttctagaaaattactaagatttggctaaa-ataaaatactactaaactactaagaaaaccctcctacatca 226  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||| |||||| ||||||||||| |||||    
T  53012849 gttctagaaaattactaagatttggctaaataataaatactactaaattactaataaaaccctcctgcatca 53012778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 19795220 - 19795139
Alignment:
Q  10 cgaaatccacgagaattgagagaaaatattgaataactttattgaatcaaaaagtgcctcttaggctgcataatgttgtgtt 91  Q
    |||||||||| | |||| ||||||||| | |||||| |||||||||| ||||| || |||||||||||||||||||| ||||    
T  19795220 cgaaatccaccaaaatttagagaaaatctggaataattttattgaataaaaaattgtctcttaggctgcataatgttctgtt 19795139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 43306940 - 43307011
Alignment:
Q  156 gttctagaaaattactaagatttggctaaa-ataaaatactactaaactactaagaaaaccctcctacatca 226  Q
    ||||||||||||||||||||||||| |||| |  ||||||||||||| |||||| ||||||||||| |||||    
T  43306940 gttctagaaaattactaagatttggttaaataataaatactactaaattactaataaaaccctcctgcatca 43307011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 365853 - 365911
Alignment:
Q  189 aaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    ||||||||||||| |||||| |||| |||||| ||||| ||||||||||||||||||||    
T  365853 aaatactactaaattactaataaaatcctcctgcatcaatctcctccacctctgaagaa 365911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 8536735 - 8536781
Alignment:
Q  263 gttgactcctccaatgaacaagagaccaccctcctggatcccattga 309  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||    
T  8536735 gttgactcttccaatgaacaagagatcaccctcctggatcccattga 8536781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 5128873 - 5128821
Alignment:
Q  13 aatccacgagaattgagagaaaatattgaataactttattgaatcaaaaagtg 65  Q
    ||||||| |||||||||||||||| | |||||| |||||||||||||||||||    
T  5128873 aatccaccagaattgagagaaaatctcgaataattttattgaatcaaaaagtg 5128821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 263 - 354
Target Start/End: Original strand, 3064144 - 3064234
Alignment:
Q  263 gttgactcctccaatgaacaagagaccaccctcctggatcccattgaagaaatgtagtagcttgccgaataatttctagatcctccatttta 354  Q
    ||||||||||||||| || ||||||  |||||| |||||||||||||| | |||||||||| | || |||| |||||||||||  |||||||    
T  3064144 gttgactcctccaataaa-aagagaataccctcatggatcccattgaacatatgtagtagcataccaaatactttctagatccatcatttta 3064234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 365954 - 366000
Alignment:
Q  263 gttgactcctccaatgaacaagagaccaccctcctggatcccattga 309  Q
    |||||||| ||||||||||| ||||||||||||| ||||||||||||    
T  365954 gttgactcttccaatgaacaggagaccaccctccgggatcccattga 366000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 19795089 - 19795051
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatac 194  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  19795089 gttctagaaaattactaagatttagctaaaataaaatac 19795051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 3069143 - 3069206
Alignment:
Q  156 gttctagaaaattactaagatttggctaaa-ataaaatactactaaactactaagaaaaccctc 218  Q
    |||||||| |||||| |||||||||||||| |  ||||||||||||| |||||| |||||||||    
T  3069143 gttctagagaattacaaagatttggctaaataataaatactactaaattactaataaaaccctc 3069206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 39913353 - 39913424
Alignment:
Q  13 aatccacgagaattgagagaaaa-tattgaataactttattgaatcaaaaa-gtgcctcttaggctgcataa 82  Q
    ||||||| ||||||| ||||||| | | |||||  |||||||||||||||| ||||||||||||||||||||    
T  39913353 aatccaccagaattgggagaaaagtctcgaatatttttattgaatcaaaaatgtgcctcttaggctgcataa 39913424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 3e-23; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 1217428 - 1217520
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaata-aaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    ||||||||||||||||||||||||||||||  | |||||||||| || |||||| ||||||||||| |||||||||||||||||| |||||||    
T  1217428 gttctagaaaattactaagatttggctaaataataaatactactgaattactaataaaaccctcctgcatcagtctcctccacctttgaagaa 1217520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 13882951 - 13883043
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaata-aaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||||||||||||||||||| |||||  | ||||||||||||| |||||| ||||||||||| |||||||||| ||||||||| |||||    
T  13882951 gttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcctgcatcagtctcgtccacctctaaagaa 13883043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 4303244 - 4303186
Alignment:
Q  189 aaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  4303244 aaatactactaaattactaataaaaccctcctacatcagtctcctccacctctgaagaa 4303186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 13883069 - 13883135
Alignment:
Q  246 aagagattctcatgcac--gttgactcctccaatgaacaagagaccaccctcctggatcccattgaa 310  Q
    ||||||||||||||||   |||| |||||||||| ||||||||||||||||||||||||||||||||    
T  13883069 aagagattctcatgcatatgttggctcctccaataaacaagagaccaccctcctggatcccattgaa 13883135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 1786539 - 1786453
Alignment:
Q  163 aaaattactaagatttggctaaaataaaa-tactacta-aactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    ||||||||||| |||||  |||||||||| ||||| || || ||||||||||||| |||||||| ||||||||||||||||||||||    
T  1786539 aaaattactaaaatttgtttaaaataaaaatactaatataattactaagaaaaccttcctacatgagtctcctccacctctgaagaa 1786453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 4303419 - 4303343
Alignment:
Q  8 ttcgaaatccacgagaattgagagaaaatattgaataactttattgaatcaaaaa--gtgcctcttaggctgcataa 82  Q
    |||| ||||||| |||||||||||||||| | |||||| ||||||||||||||||  |||||||||||||| |||||    
T  4303419 ttcggaatccactagaattgagagaaaatctcgaataattttattgaatcaaaaagtgtgcctcttaggctacataa 4303343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 11001085 - 11001134
Alignment:
Q  198 taaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  11001085 taaaatactaaggaaaccctcctacatcagtctcctccacctctgaagaa 11001134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 859424 - 859495
Alignment:
Q  156 gttctagaaaattactaagatttggctaaa-ataaaatactactaaactactaagaaaaccctcctacatca 226  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||| |||||| |||| |||||| |||||    
T  859424 gttctagaaaattactaagatttggctaaataataaatactactaaattactaataaaatcctcctgcatca 859495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 1220701 - 1220772
Alignment:
Q  156 gttctagaaaattactaagatttggctaaa-ataaaatactactaaactactaagaaaaccctcctacatca 226  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||| |||||| |||| |||||| |||||    
T  1220701 gttctagaaaattactaagatttggctaaataataaatactactaaattactaataaaatcctcctgcatca 1220772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 8915432 - 8915481
Alignment:
Q  198 taaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||| ||||||| |||||||||||||||||||||||||| ||||||||||    
T  8915432 taaaatactaaggaaaccctcctacatcagtctcctccatctctgaagaa 8915481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 13882811 - 13882872
Alignment:
Q  13 aatccacgagaattgagagaaaatattgaataactttattgaatcaaaaagtgcctcttagg 74  Q
    ||||||| |||||||||||||||| |  ||||| ||||||||||||||||||| ||||||||    
T  13882811 aatccaccagaattgagagaaaatctcaaataattttattgaatcaaaaagtgtctcttagg 13882872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 31577304 - 31577377
Alignment:
Q  10 cgaaatccacgagaattgagagaaaa-tattgaataactttattgaatcaaaaagtgcctcttaggctgcataa 82  Q
    |||||||||| ||||||||||||||| | |||||||  |||||||||| ||||||| ||||||||| |||||||    
T  31577304 cgaaatccaccagaattgagagaaaagtcttgaatatttttattgaatgaaaaagttcctcttaggttgcataa 31577377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 4300373 - 4300306
Alignment:
Q  160 tagaaaattactaagatttggctaaaata-aaatactactaaactactaagaaaaccctcctacatca 226  Q
    ||||||||||||| | ||||||||||  | ||||||||||||| |||||| |||||||||||||||||    
T  4300373 tagaaaattactatgttttggctaaataataaatactactaaattactaataaaaccctcctacatca 4300306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 11001161 - 11001224
Alignment:
Q  246 aagagattctcatgcacgttgactcctccaatgaacaagagaccaccctcctggatcccattga 309  Q
    ||||| ||| |||||| ||| |||||||||||||| |||||| || ||||||||||||||||||    
T  11001161 aagagcttcccatgcatgttaactcctccaatgaaaaagagatcatcctcctggatcccattga 11001224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 13886455 - 13886526
Alignment:
Q  156 gttctagaaaattactaagatttggctaaa-ataaaatactactaaactactaagaaaaccctcctacatca 226  Q
    |||||||||||||||||||||||| ||||| |  ||||||||||||| |||||| |||||||| || |||||    
T  13886455 gttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaacccttctgcatca 13886526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 1217568 - 1217618
Alignment:
Q  269 tcctccaatgaacaagagaccaccctcctggatcccattgaa-gaaatgta 318  Q
    ||||||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  1217568 tcctccaattaacaagagaccaccctcctggatcccatagaatgaaatgta 1217618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 3778973 - 3779014
Alignment:
Q  185 aataaaatactactaaactactaagaaaaccctcctacatca 226  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  3778973 aataaaatactactaaattactaagaaaatcctcctacatca 3779014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 13886313 - 13886374
Alignment:
Q  13 aatccacgagaattgagagaaaatattgaataactttattgaatcaaaaagtgcctcttagg 74  Q
    ||||||| | |||||||||||||| | |||| | ||||||||||||||||||| ||||||||    
T  13886313 aatccaccataattgagagaaaatctcgaatgattttattgaatcaaaaagtgtctcttagg 13886374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 235
Target Start/End: Complemental strand, 11228585 - 11228510
Alignment:
Q  161 agaaaattactaagatttggctaaaat-aaaatactactaaactactaagaaaaccctcctacatcagtctcctcc 235  Q
    ||||||||||||| ||| ||||||||| |||||||||  ||| ||||| | ||||| |||||||||||||| ||||    
T  11228585 agaaaattactaaaattgggctaaaataaaaatactataaaattactatggaaaccatcctacatcagtcttctcc 11228510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 4303159 - 4303097
Alignment:
Q  246 aagagattctcatgcacgttgactcctccaatgaacaagagaccaccctcctggatcccattg 308  Q
    ||||| ||| |||||| || |||||||||||||||||||||  ||||| || |||||||||||    
T  4303159 aagagcttcccatgcatgtcgactcctccaatgaacaagagcacacccacccggatcccattg 4303097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 1369566 - 1369501
Alignment:
Q  246 aagagattctcatgcacgttgactcctccaatgaac-aagagaccaccctcctggatcccattgaa 310  Q
    ||||| ||| |||| | ||||||||||||||||||| ||| |||||||||||  ||||||||||||    
T  1369566 aagagcttcccatgaatgttgactcctccaatgaacaaagcgaccaccctccacgatcccattgaa 1369501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 29175614 - 29175573
Alignment:
Q  185 aataaaatactactaaactactaagaaaaccctcctacatca 226  Q
    ||||||||||||||||| |||||| ||||||||||| |||||    
T  29175614 aataaaatactactaaattactaataaaaccctcctgcatca 29175573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 2e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 6659598 - 6659689
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaata-aaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    ||||||||||||||||||||||||||||||  | |||||||   ||| |||||||||| ||||||||||||||||||||| ||||||||||||    
T  6659598 gttctagaaaattactaagatttggctaaataataaatactgtaaaattactaagaaa-ccctcctacatcagtctcctctacctctgaagaa 6659689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 13085360 - 13085454
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaataaaatactactaaactactaagaaa---accctcctacatcagtctcctccacctctgaagaa 247  Q
    ||||||||| ||||||||||| |||||||||||||||||||  ||| |||||| |||   ||||||||||||||||||| |||| ||||||||||    
T  13085360 gttctagaatattactaagatgtggctaaaataaaatactataaaattactaaaaaaaacaccctcctacatcagtctcttccatctctgaagaa 13085454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 13085212 - 13085295
Alignment:
Q  8 ttcgaaatccacgagaattgagagaaaatattgaataactttattgaatcaaaaagtgcctcttaggctgcataatgttgtgtt 91  Q
    |||| ||||||| | |||||||||||||| | |||||| |||||||||| |||||||| |||||||||||||||||||| ||||    
T  13085212 ttcggaatccaccaaaattgagagaaaatctcgaataattttattgaataaaaaagtgtctcttaggctgcataatgttctgtt 13085295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 13086268 - 13086338
Alignment:
Q  21 agaattgagagaaaatattgaataactttattgaatcaaaaagtgcctcttaggctgcataatgttgtgtt 91  Q
    |||||||||||||||| | |||||| |||||||||| |||||||||| ||||||| |||||||||| ||||    
T  13086268 agaattgagagaaaatctcgaataattttattgaattaaaaagtgccccttaggccgcataatgttctgtt 13086338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 768 - 861
Target Start/End: Original strand, 47406800 - 47406887
Alignment:
Q  768 catcttcaaagcttatatatattggattgactatcgcatgaatatgtaacatatgtgattggattggactactagcttcccgatgcacccactg 861  Q
    ||||||||||||||| |||||||| |||||||||| |||||||||||| ||| ||||||||||     | ||||||||||||| ||||||||||    
T  47406800 catcttcaaagcttacatatattg-attgactatcacatgaatatgtagcatgtgtgattgga-----ccactagcttcccgaggcacccactg 47406887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 22716364 - 22716301
Alignment:
Q  246 aagagattctcatgcacgttgactcctccaatgaacaagagaccaccctcctggatcccattga 309  Q
    ||||| ||| ||| || |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  22716364 aagagcttcccattcatgttgactcctccaatgaacaagagaccaccctcctgaatcacattga 22716301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 246 - 309
Target Start/End: Original strand, 22988853 - 22988916
Alignment:
Q  246 aagagattctcatgcacgttgactcctccaatgaacaagagaccaccctcctggatcccattga 309  Q
    ||||| ||| ||| || |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  22988853 aagagcttcccattcatgttgactcctccaatgaacaagagaccaccctcctgaatcacattga 22988916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 22691128 - 22691063
Alignment:
Q  156 gttctagaaaattactaagatttggctaaa-ataaaatactactaaactactaagaaaaccctcct 220  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||| || ||| |||||||||||    
T  22691128 gttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaaccctcct 22691063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 868 - 929
Target Start/End: Original strand, 47407061 - 47407122
Alignment:
Q  868 ggcattccaattttgggggatcccatatggctattggagtttcatgaacaacaagtaaatgt 929  Q
    ||||||||||||||||||  ||  ||||||||||| |||||||||||||| |||||||||||    
T  47407061 ggcattccaattttggggcctcatatatggctatttgagtttcatgaacagcaagtaaatgt 47407122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 22716483 - 22716391
Alignment:
Q  156 gttctagaaaattactaagatttggctaaa-ataaaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||||||||| ||||||||||||||| |  |||||||| |||| |||||| ||||| |  || ||||||||||||||| |||| |||||    
T  22716483 gttctagaaaattattaagatttggctaaataataaatactattaaattactaataaaactcaactgcatcagtctcctccagctctaaagaa 22716391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 22988734 - 22988826
Alignment:
Q  156 gttctagaaaattactaagatttggctaaa-ataaaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||||||||||| ||||||||||||||| |  |||||||| |||| |||||| ||||| |  || ||||||||||||||| |||| |||||    
T  22988734 gttctagaaaattattaagatttggctaaataataaatactattaaattactaataaaactcaactgcatcagtctcctccagctctaaagaa 22988826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 6659455 - 6659525
Alignment:
Q  13 aatccacgagaattgagagaaaatattgaataactttattgaatcaaaaag-tgcctcttaggctgcataa 82  Q
    ||||||| |||||||||||||||| | |||||  |||| |||||||||||| ||||||||||||| |||||    
T  6659455 aatccaccagaattgagagaaaatctcgaatagttttagtgaatcaaaaagttgcctcttaggctacataa 6659525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 19935313 - 19935271
Alignment:
Q  171 taagatttggctaaaataaaatactactaaactactaagaaaa 213  Q
    ||||||||| ||||||||||||||||||||| |||||||||||    
T  19935313 taagatttgactaaaataaaatactactaaattactaagaaaa 19935271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 589 - 629
Target Start/End: Original strand, 1639314 - 1639354
Alignment:
Q  589 cttaggaggtaaagtcttccatttgagtagaattgttggaa 629  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  1639314 cttaggaggaaaagtcttccatttgagtagacttgttggaa 1639354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 50519512 - 50519575
Alignment:
Q  164 aaattactaagatttggctaaaataaaa-tactactaaactactaagaaaaccctcctacatca 226  Q
    |||||| ||| ||||||||||||||||| |||||  ||| ||||||| ||||||||||||||||    
T  50519512 aaattattaaaatttggctaaaataaaaatactataaaattactaaggaaaccctcctacatca 50519575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 10494664 - 10494626
Alignment:
Q  256 catgcacgttgactcctccaatgaacaagagaccaccct 294  Q
    |||||| || |||||||||||||||||||||||||||||    
T  10494664 catgcatgtcgactcctccaatgaacaagagaccaccct 10494626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 21845158 - 21845250
Alignment:
Q  156 gttctagaaaattactaagatttggctaaaata-aaatactactaaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    ||||||||||||||||||||||||| ||||  | ||||||||  ||| |||||||||||||||| | |||||||||  |||||||||||||||    
T  21845158 gttctagaaaattactaagatttggttaaataataaatactataaaattactaagaaaaccctcttgcatcagtctgttccacctctgaagaa 21845250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 19501222 - 19501288
Alignment:
Q  160 tagaaaattactaagatttggctaaaataaaatactactaaactactaagaaaaccctcctacatca 226  Q
    ||||||||||||||||||||| |||||||||||||||  ||| ||||||  ||||||||||||||||    
T  19501222 tagaaaattactaagatttgggtaaaataaaatactataaaattactaaagaaaccctcctacatca 19501288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 19497433 - 19497476
Alignment:
Q  48 ttattgaatcaaaaagtgcctcttaggctgcataatgttgtgtt 91  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  19497433 ttattgaatcaaaaagtgcctcttaggctgcataatgttctgtt 19497476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 21849091 - 21849148
Alignment:
Q  8 ttcgaaatccacgagaattgagagaaaatattgaataactttattgaatcaaaaagtg 65  Q
    |||| ||||||| |||||||||||||||| | |||||| |||||||||||||||||||    
T  21849091 ttcggaatccactagaattgagagaaaatctcgaataattttattgaatcaaaaagtg 21849148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 40778911 - 40778963
Alignment:
Q  13 aatccacgagaattgagagaaaatattgaataactttattgaatcaaaaagtg 65  Q
    ||||||| |||||||||||||||| | |||||| |||||||||||||||||||    
T  40778911 aatccaccagaattgagagaaaatctcgaataattttattgaatcaaaaagtg 40778963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 256 - 307
Target Start/End: Complemental strand, 18252160 - 18252109
Alignment:
Q  256 catgcacgttgactcctccaatgaacaagagaccaccctcctggatcccatt 307  Q
    |||||| || ||||||||||||| ||||||||||||||||||| ||||||||    
T  18252160 catgcatgtggactcctccaatggacaagagaccaccctcctgaatcccatt 18252109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 8456642 - 8456683
Alignment:
Q  185 aataaaatactactaaactactaagaaaaccctcctacatca 226  Q
    ||||||||||||||| | ||||||||||||||||||||||||    
T  8456642 aataaaatactactagattactaagaaaaccctcctacatca 8456683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 21849239 - 21849312
Alignment:
Q  156 gttctagaaaattactaagatttggctaaa-ataaaatactactaaactactaagaaaaccctcctacatcagt 228  Q
    ||||||||||||||||||||||||| |||| |  ||||||||  ||| |||||||||||||||| | |||||||    
T  21849239 gttctagaaaattactaagatttggttaaataataaatactataaaattactaagaaaaccctcgtgcatcagt 21849312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 21857153 - 21857226
Alignment:
Q  156 gttctagaaaattactaagatttggctaaa-ataaaatactactaaactactaagaaaaccctcctacatcagt 228  Q
    ||||||||||||||||||||||||| |||| |  ||||||||  ||| |||||||||||||||| | |||||||    
T  21857153 gttctagaaaattactaagatttggttaaataataaatactataaaattactaagaaaaccctcgtgcatcagt 21857226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 26140185 - 26140144
Alignment:
Q  185 aataaaatactactaaactactaagaaaaccctcctacatca 226  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  26140185 aataaaatactactaaactattaataaaaccctcctacatca 26140144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 21845277 - 21845324
Alignment:
Q  246 aagagattctcatgcacgttgactcctccaatgaacaagagaccaccc 293  Q
    ||||| ||| |||||| ||||||||||||||||||||||| |||||||    
T  21845277 aagagcttcccatgcatgttgactcctccaatgaacaagaaaccaccc 21845324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 18252246 - 18252197
Alignment:
Q  198 taaactactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||| ||||||| |||||||||| |||||| |||||| ||||||||||||    
T  18252246 taaaatactaaggaaaccctcctgcatcagcctcctctacctctgaagaa 18252197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 185
Target Start/End: Original strand, 40779055 - 40779084
Alignment:
Q  156 gttctagaaaattactaagatttggctaaa 185  Q
    ||||||||||||||||||||||||||||||    
T  40779055 gttctagaaaattactaagatttggctaaa 40779084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 4)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 10486 - 10434
Alignment:
Q  189 aaatactactaaactactaagaaaaccctcctacatcagtctcctccacctct 241  Q
    |||||||| |||| ||||||||||||||||||||||||||||| |||||||||    
T  10486 aaatactaataaattactaagaaaaccctcctacatcagtctcatccacctct 10434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 49127 - 49091
Alignment:
Q  211 aaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||| ||||||||||||||||||||||||||||||||    
T  49127 aaactctcctacatcagtctcctccacctctgaagaa 49091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 247
Target Start/End: Complemental strand, 37523 - 37492
Alignment:
Q  216 ctcctacatcagtctcctccacctctgaagaa 247  Q
    ||||||||||||||||||||||||||||||||    
T  37523 ctcctacatcagtctcctccacctctgaagaa 37492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 10383 - 10349
Alignment:
Q  264 ttgactcctccaatgaacaagagaccaccctcctg 298  Q
    ||||||||||||||||||||||||| |||||||||    
T  10383 ttgactcctccaatgaacaagagacaaccctcctg 10349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 15749 - 15691
Alignment:
Q  252 ttctcatgcacgttgactcctccaatgaacaagagaccaccctcctggatcccattgaa 310  Q
    |||||||||| |||||||||||||||||||| |||||||||||||  | ||||||||||    
T  15749 ttctcatgcatgttgactcctccaatgaacaggagaccaccctccaaggtcccattgaa 15691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 145555 - 145511
Alignment:
Q  203 tactaagaaaaccctcctacatcagtctcctccacctctgaagaa 247  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||    
T  145555 tactaataaaaccctcctacatcagtctcctccacctcagaagaa 145511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 300 - 333
Target Start/End: Original strand, 144353 - 144386
Alignment:
Q  300 atcccattgaagaaatgtagtagcttgccgaata 333  Q
    |||||||||||||||||||||||| |||||||||    
T  144353 atcccattgaagaaatgtagtagcatgccgaata 144386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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