View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3395-Insertion-6 (Length: 816)
Name: NF3395-Insertion-6
Description: NF3395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3395-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 386 - 815
Target Start/End: Original strand, 43978792 - 43979221
Alignment:
| Q |
386 |
atgtgtacttaagcaatatgccataaataggtatttggacacttatctaagtttgggtgatgttttagttcttgaccgcaacaagtgtgaagtgctgact |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43978792 |
atgtgtacttaagcaatatgccataaataggtatttggacacttatctaagtttgggtgatgttttagttcttgaccgcaacaagtgtgaagtgctgacc |
43978891 |
T |
|
| Q |
486 |
ggcgaacctgcattctagccataacaaacttctttttcttcggaattcactgtctaacatagtaacaatctaactaataccactggtccctattcatttt |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43978892 |
ggcgaacctgcattctagccataacaaacttctttttcttcggaattcactgtctaacatagtaacaatctaactaataccactggtccctattcatttt |
43978991 |
T |
|
| Q |
586 |
aagtgttttcaattattgatttatctattaccacaagtcaagtgctaaccatctaactaacataacaccactgttttcaacgattgttatactttttgtt |
685 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43978992 |
aagtgttttcaattattgatttatctattaccacaagtcaagtgctaaccatctaactaacataacaccactgttttcaacgattgttatactttttgtt |
43979091 |
T |
|
| Q |
686 |
gaaattttatgatttagaagaaagtcaagtgttattactattaccataagccgaagatcaatactaatnnnnnnngccccctcgacnnnnnnngtactaa |
785 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |
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| T |
43979092 |
gaaattttatgatttagaagaaagtcaagtgttattactattaccataagccgaagatcaatactaataaaaaaagtcccctcgacaaaaaaagtactaa |
43979191 |
T |
|
| Q |
786 |
tagttaaatatgtctttgtttccacttttg |
815 |
Q |
| |
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|
| T |
43979192 |
tagttaaatatgtctttgtttccacttttg |
43979221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 257; E-Value: 1e-142
Query Start/End: Original strand, 7 - 319
Target Start/End: Original strand, 43978411 - 43978725
Alignment:
| Q |
7 |
agttacattctatcacttctattttcttaaattattatcatgtctgcggttggtgccgatacttcttagggttgtataagtttaacaacttgatagaaca |
106 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43978411 |
agttacattctatcacttctgttttcttaaattattatcatgtctgcggttggtgccgatacttcttagggttgtataagtttaacaacttgatagaaca |
43978510 |
T |
|
| Q |
107 |
agaaagaaggaataaacaggggaaataagccagaggtttttctgcactaaccgattattccaataatggttcttattaaataagtgtcaaccatggctgc |
206 |
Q |
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| T |
43978511 |
agaaagaaggaataaacaggggaaataagccagaggtttttctgcactaaccgattattccaataatggttcttattaaataagtgtctaccatggctgc |
43978610 |
T |
|
| Q |
207 |
aaaattcaaagaagaagctgaagaaagacgatgtaaacaaatgaagaatgtttctcc--nnnnnnnnnnnnncaaatgaagaatgcaaatgaaaattgat |
304 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
43978611 |
aaaattcaaagaagaagctgaagaaagacgatgtaaacaaatgaagaatgtttctccaaaaaaaaaaaaaaacaaatgaagaatgcaaatgaaaattgat |
43978710 |
T |
|
| Q |
305 |
agctaaatatatata |
319 |
Q |
| |
|
||||||||||||||| |
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|
| T |
43978711 |
agctaaatatatata |
43978725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 10338651 - 10338614
Alignment:
| Q |
9 |
ttacattctatcacttctattttcttaaattattatca |
46 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| |
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|
| T |
10338651 |
ttacattcaatcacttctattttcttaaattattatca |
10338614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 29236303 - 29236265
Alignment:
| Q |
6 |
cagttacattctatcacttctattttcttaaattattat |
44 |
Q |
| |
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||||||||||| |||||||||||||||| |||||||||| |
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|
| T |
29236303 |
cagttacattcaatcacttctattttctcaaattattat |
29236265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 31652490 - 31652454
Alignment:
| Q |
9 |
ttacattctatcacttctattttcttaaattattatc |
45 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |
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|
| T |
31652490 |
ttacattcaatcacttctattttcttaaattattatc |
31652454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 28478061 - 28478099
Alignment:
| Q |
5 |
acagttacattctatcacttctattttcttaaattatta |
43 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||| |
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| T |
28478061 |
acagttacattcaatcacttctatttttttaaattatta |
28478099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 28735830 - 28735864
Alignment:
| Q |
9 |
ttacattctatcacttctattttcttaaattatta |
43 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| |
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|
| T |
28735830 |
ttacattcaatcacttctattttcttaaattatta |
28735864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 22556280 - 22556246
Alignment:
| Q |
9 |
ttacattctatcacttctattttcttaaattatta |
43 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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|
| T |
22556280 |
ttacattcaatcacttctattttcttaaattatta |
22556246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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