View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3395-Insertion-8 (Length: 776)
Name: NF3395-Insertion-8
Description: NF3395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3395-Insertion-8 |
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Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 8 - 632
Target Start/End: Original strand, 18092064 - 18092679
Alignment:
| Q |
8 |
tcagcgtatgctcacgttgaatgaacaattattctttctccaatgagtgctcacttcaaatcaagttctgcagaaaacaaaaagatgtagagactacata |
107 |
Q |
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| T |
18092064 |
tcagcgtatgctcacgttgaatgaacaattattctttctccaatgagtgctcacttcaaatcaagttctgcagaaaacaaaaagatgtagagactacata |
18092163 |
T |
|
| Q |
108 |
tatagatcaatcataattcataatagtttaatatgattttaaacttaacttgcttacataaaatacataatatattcagacgnnnnnnnnnnnnnnnnnn |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18092164 |
tatagatcaatcataattcataatagtttaatatgattttaaacttaacttgcttacataaaatacataatatattcagacgtttttatttattt----- |
18092258 |
T |
|
| Q |
208 |
nnnngtcgaaaatataaattgtacaacgtgtttagttctttttctttagaataccagtcataaattttatttaaaaattggcaaataaaaagtagtattc |
307 |
Q |
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| T |
18092259 |
----gtcgaaaatataaattgtataacgtgtttagttctttttctttagaataccagtcataaattttatttaaaaattggcaaataaaaagtagtattc |
18092354 |
T |
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| Q |
308 |
tacgcgtccaaaacaaatgtatttatttctgtctccacacttggccttccaaattagagagaaaggagggttgaattcatttggtttaaaaagtataggt |
407 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18092355 |
tacgcgtccaaaacaaatgtatttatttctgtctctacacttggccttccaaattagagagaaaggagggttgaattcatttggtttaaaaagtataggt |
18092454 |
T |
|
| Q |
408 |
aagcttgcttacaaagattgtattgtctggatattgaagatatgaaaccacatctttccaattccccaccttaaaagtaaaatacttttaagtactctgg |
507 |
Q |
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| T |
18092455 |
aagcttgcttacaaagattgtattgtctgcatattgaagatatgaaaccacatctttccaattccccaccttaaaagtaaaatacttttaagtagtctgg |
18092554 |
T |
|
| Q |
508 |
agacactgtcttattcataagagtatcaagatgaactaaaaaggagccaacgggtcccctgtttcaaaccccttctaatatctacttgttggtgtaagct |
607 |
Q |
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| T |
18092555 |
agacactgtcttattcataagagtatcaagatgaactaaaaaggagccaacgggtcctctgtttcaaaccccttctaatatctacttgttggtgtaagct |
18092654 |
T |
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| Q |
608 |
ttaaaggcaaaaataatctatgttt |
632 |
Q |
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| T |
18092655 |
ttaaaggcaaaaataatctatgttt |
18092679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 616 - 776
Target Start/End: Original strand, 18092696 - 18092856
Alignment:
| Q |
616 |
aaaaataatctatgtttaaacttaataattgtttcatgactgtttatttattgattttgtttgttgtcaacacaataaagtcgttataatagtaactttg |
715 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18092696 |
aaaaataatctatgtttaaacttaataattgtttcatgactgtttatttattgattttgtttgttgtcaacacaataaagtcgttataatagtaactttg |
18092795 |
T |
|
| Q |
716 |
cttaattgaacgtcaagtgttgtaacatcccaacttttgcagcttcaaagattttcactta |
776 |
Q |
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| T |
18092796 |
cttaattgaacgtcaagtgttgtaacatcccaacttttgcagcttgaaagattttcactta |
18092856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 8 - 172
Target Start/End: Original strand, 27448458 - 27448625
Alignment:
| Q |
8 |
tcagcgtatgctcacgttgaatgaacaattattctttctccaatgagtgctcacttcaaatcaagttctgcagaaaacaaaaagatgtagag-actacat |
106 |
Q |
| |
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|||||||| ||||| ||||||||||||||| ||||||||||||| ||| | ||||||| |||||||||||| ||| ||| ||| |||||| ||||||| |
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| T |
27448458 |
tcagcgtaagctcaagttgaatgaacaattcttctttctccaat-agtaccaacttcaattcaagttctgcaacaaagaaatagaagtagaggactacat |
27448556 |
T |
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| Q |
107 |
---atatagatcaatcataattcataatagtttaatatgattttaaacttaacttgcttacataaaata |
172 |
Q |
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| T |
27448557 |
catatatagattaatcataatgcataatagtttaatataattttaaatttaacttgcttacataaaata |
27448625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 27422700 - 27422864
Alignment:
| Q |
8 |
tcagcgtatgctcacgttgaatgaacaattattctttctccaat--gagtgctcacttcaaatcaagttctgcagaaaacaaaaagatgtagagactaca |
105 |
Q |
| |
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|||||||| ||||| ||||||||||||||| ||||||| ||||| |||||| |||||||| |||| |||| || ||||||||||| ||| |||||||| |
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| T |
27422700 |
tcagcgtaagctcaagttgaatgaacaattcttctttcaccaatatgagtgcccacttcaattcaaattctacaagaaacaaaaagaagtaaagactaca |
27422799 |
T |
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| Q |
106 |
tatatagatcaatcataattcataatagtttaatatgattttaaacttaacttgcttacataaaa |
170 |
Q |
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| T |
27422800 |
gatataaattaataatgatacataatagtttaatatgattttaaatttaaattccatacataaaa |
27422864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 418 - 557
Target Start/End: Original strand, 18072724 - 18072856
Alignment:
| Q |
418 |
acaaagattgtattgtctggatattgaagatatgaaaccacatctttccaattccccaccttaaaagtaaaatacttttaagtactctggagacactgtc |
517 |
Q |
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|||||||||||||||| | ||||| ||||| |||||||||| ||| ||||| |||||||||| |||||||||||| ||| |||||| |||| |
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| T |
18072724 |
acaaagattgtattgtgagcatattaaagatgtgaaaccacaatttttgaattcgccaccttaaa-------tacttttaagtagtctagagacattgtc |
18072816 |
T |
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| Q |
518 |
ttattcataagagtatcaagatgaactaaaaaggagccaa |
557 |
Q |
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| T |
18072817 |
ttattcataagagtatcaagatgaactaaaaaggggccaa |
18072856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 488 - 557
Target Start/End: Original strand, 27423249 - 27423318
Alignment:
| Q |
488 |
aatacttttaagtactctggagacactgtcttattcataagagtatcaagatgaactaaaaaggagccaa |
557 |
Q |
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|||||||||||||| ||| |||||| |||||||| |||||||||| |||||||||||||||||| ||||| |
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| T |
27423249 |
aatacttttaagtagtctagagacattgtcttatacataagagtagcaagatgaactaaaaaggggccaa |
27423318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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