View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3395R-Insertion-2 (Length: 1030)
Name: NF3395R-Insertion-2
Description: NF3395R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3395R-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 9 - 618
Target Start/End: Complemental strand, 49247061 - 49246460
Alignment:
| Q |
9 |
tgaacagtttctgtcccattattaaggccaaccttagaatcatcaacgatagatttcttgctcttgctcttgagaacggtgtttgcagaagcaacatcga |
108 |
Q |
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| T |
49247061 |
tgaacagtttctgtcccattattaaggccaaccttagaatcatcaacgatagatttcttgctcttgctcttgagaacggtgtttgcagaagcaacatcga |
49246962 |
T |
|
| Q |
109 |
gcggtttggatttcccacaacccatttcnnnnnnnnnnnnnattatagaatgattgtgggaaacacacgcacaaaggagaaaaacagagattgaaggatg |
208 |
Q |
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| T |
49246961 |
gcggtttggatttcccacaacccatttctttttaatttttgattatagaatgattgtgggaaacacacgcacaaaggagaaaaacagagattgaaggatg |
49246862 |
T |
|
| Q |
209 |
gaatggatgtgtttgtgatggggagggggaagggaatatatgaatggaagaagggtggttttgttgttatggttttagctgtagggttgtggcctgcaac |
308 |
Q |
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| T |
49246861 |
gaatggatgtgtttgtgatgggga------agggaatatatgaatggaagaagggtggttttgttgttatggttttagctgtagggttgtggcctgcaac |
49246768 |
T |
|
| Q |
309 |
tgcacaattctatagaaaggaaaacaaagagtgcgtcttttccgctgtcacgcgcatcgttgtgataatcgaaaggatgnnnnnnntggacaaattgcgc |
408 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49246767 |
tgcacaattctatagaaaggaaaacaaacagtgcgtcttttccgctgtcacgcgcatcgttgtgataatcgaaaggatgaaaaaaatggacaaattgcgc |
49246668 |
T |
|
| Q |
409 |
ttgtatgtttattcgttaaccttttctgttttcgctgtcttacggttcgactattgtcgttacgaataaagtggaggagattgcacaattaataaataaa |
508 |
Q |
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| T |
49246667 |
ttgtttgtttattcgttaaccttttctgttttcgctgtc-gacggttcgactattgtcgttacgaataaagtggaggagattgcacaattaataaataaa |
49246569 |
T |
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| Q |
509 |
taaaatatttaaatatatgactggtcgtgcatttttactactccatccatttttaaaatgagtgtcgtttgaagttaacgatcctagctaattatatact |
608 |
Q |
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|||||||||||||||||||| |||| |||| ||||| |||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
49246568 |
taaaatatttaaatatatgattggt-gtgcggttttattactccatccgtttttaaaatgaatgtcatttgaagttaacgatcctagctaattatatact |
49246470 |
T |
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| Q |
609 |
tgattactca |
618 |
Q |
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| T |
49246469 |
tgattgctca |
49246460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 724 - 776
Target Start/End: Complemental strand, 49246365 - 49246313
Alignment:
| Q |
724 |
aataaatacttgattgctcttctacctttaccatatttagttattgttcattg |
776 |
Q |
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| T |
49246365 |
aataaatacttgattgctcttgtacctttatcatattttgttattgttcattg |
49246313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 776 - 827
Target Start/End: Original strand, 31647619 - 31647670
Alignment:
| Q |
776 |
ggataattatccatggacattctttttctcatacacccactctaccaccccc |
827 |
Q |
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| T |
31647619 |
ggataattatccatggacattctttttctcatacacccactctaccaccccc |
31647670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 935 - 1026
Target Start/End: Original strand, 31647775 - 31647865
Alignment:
| Q |
935 |
ccgacgagatcccaacacaaacctctcattaccgacgacgaagaaaggtggggaacgacggaggacgaccgatggtgatgatgaaatataac |
1026 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| | | ||||||| ||||||||||| |
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| T |
31647775 |
ccgacgagatcccaacacaaaccctccattaccgacggcgaaggaaggtggggaacgacggaggacg-gcaacggtgatggtgaaatataac |
31647865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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