View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3395R-Insertion-3 (Length: 1023)
Name: NF3395R-Insertion-3
Description: NF3395R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3395R-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 630; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 268 - 1002
Target Start/End: Complemental strand, 43978004 - 43977263
Alignment:
| Q |
268 |
agggataatctaatttgacatcaagattgtagggnnnnnnntgaaagaattaatttaacacgctttagaatatcaccatacaattttatttttgctaata |
367 |
Q |
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| T |
43978004 |
agggataatctaatttgacatcaagattgtagggaaaaaaatgaaagaattaatttaacacgctttagaatatcaccatacaattttatttttgctaata |
43977905 |
T |
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| Q |
368 |
tatggaatgttattttatttgcaggaaatgtcatttctttttgtttattcatgtcaccggtgtaaatttatctccctctttctctttatccttgtactta |
467 |
Q |
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| T |
43977904 |
tatggaatgttattttatttgcaggaaatgccatttctttttgtttattcatgtcaccggtgtaaatttatctccctctttctctttatccttgtactta |
43977805 |
T |
|
| Q |
468 |
atttaaggattttagcactgataattaatgacaaatatgtatttctaatatatacgcaggcctacatttataaaaatatgcaaggcaaaatcagtgcaag |
567 |
Q |
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| T |
43977804 |
atttaaggattttagcactgataattaatgacaaatatgtatttctaatatatacgcaggcctacatttataaaaatatgcaaggcaaaatcagtgcaag |
43977705 |
T |
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| Q |
568 |
atttcaaaccagatccgtatgtggtaactatactcaattgtgcaatgtgggcattctatggaatgcccttcattagtaaaagtaacactcttgtcctcac |
667 |
Q |
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| T |
43977704 |
atttcaaaccagatccgtatgtggtaactatactcaattgtgcaatgtggtcattctatggaatgcccttcattagtaaaagtaacactcttgtcctcac |
43977605 |
T |
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| Q |
668 |
aattaatggatttggcttcttcattgagattatctacacttccatcttcttcgtatactcaaatgggagtaagcgtgtgagaaacatctcaaacttatta |
767 |
Q |
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| T |
43977604 |
aattaatggctttggcttcttcattgagattatctacacttccatcttcttcgtatactcaaatgggagtaagcgtgtgagaaacatctcaaacttatta |
43977505 |
T |
|
| Q |
768 |
attaagttatagtctatttttcttttcaatgttttaaaaatcgaatcgaaggtcaaaccatgaacattgtctatgatatgttcagttacttaaatgttgg |
867 |
Q |
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| T |
43977504 |
attaagttacagtctatttttcctttcaatgttttaaaaatcgaactgaaggtcaaaccatgaacattgtctatgatatgttcagttacttaaatgtagg |
43977405 |
T |
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| Q |
868 |
attgtttaattttggttcaagcgatttaaactagttgaaccatgatccaaaagtctgaccgg-ttgatgtcaagttcaa-ttttaaaacattag-ttttt |
964 |
Q |
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| T |
43977404 |
attgtttaattttggttcaagcgatttaaaccagttgaaccatgatccaaaagtctgaccggtttgatgtcaagttcaatttttaaaacattagtttttt |
43977305 |
T |
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| Q |
965 |
cacttaaca--tgatc-ata-tactgattctataatttttgt |
1002 |
Q |
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| T |
43977304 |
cacttaacaattgatcaatatttctgattctataatttttgt |
43977263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 43978416 - 43978136
Alignment:
| Q |
9 |
gtaactatatgtgttggtgttatattaacgtcaacaccattgtgcccaatgtcaaacatcaaacatgctttaaatttgatattggtgctacttaacataa |
108 |
Q |
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| T |
43978416 |
gtaactatatgtgttggtgttgtgttaacgtcaacaccattgtgcccaatgtcaaacatcaaacatgctttaaatttgatattggtgctacttaacataa |
43978317 |
T |
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| Q |
109 |
caccgcattctttctcaatatttttatttggtcattttgatctaaagagaatgatcaatctagtgtgacatgagtgataaatatttgaatgcttcaatct |
208 |
Q |
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| T |
43978316 |
caccgcattctttctcaatatttttatttggtcattttgatctaaagagaatgatcaacctagtgtgacatgagtgataaatatttgaatgcttcaatct |
43978217 |
T |
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| Q |
209 |
tgacttatatgtggagagagatcaattctttaaatgagtttgagttagagtttgcaa------gcagggataatctaattt |
283 |
Q |
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| T |
43978216 |
tgacttatatgtggagagagatcaattctttaaatgagtttgagttagagtttgcaactgcatgcagggataatctaattt |
43978136 |
T |
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