View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3395R-Insertion-4 (Length: 954)
Name: NF3395R-Insertion-4
Description: NF3395R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3395R-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 8 - 581
Target Start/End: Complemental strand, 4952994 - 4952424
Alignment:
| Q |
8 |
aaaaaggagacatgaggactcaaactcattgcctcacgatacaaaaggcctttaatttctgctacgacacatgctaaaccaatgaaatagcatcctaatc |
107 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
4952994 |
aaaaaggagacatgaggactcaaactcatggcctcacgatacaaaaggcctttaatttct--tacgacacatgctaaatcaatgaaatagcatcctaatc |
4952897 |
T |
|
| Q |
108 |
ttgtatttattagatatctgaggggagccatgattatcatgggatcccataaagatccgtcactggctcgtgggtatgctctctattaatccacgagttt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4952896 |
ttgtatttattagatatctgaggggagccatgattatcatgggatcccatgaagatccgtcactggctcgtggatatgctctctattaatccacgagttt |
4952797 |
T |
|
| Q |
208 |
tcagttactcacccatcatcctcttaggtgtgttaacnnnnnnncaatggttttagttgatattatattgatcctcgtcaatataacataatattatatc |
307 |
Q |
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| T |
4952796 |
tca-ttactcacccatcatcctcttaggtgtgttaactttttt-caatggttttagttgatattatattggtcctcgtcaatataacataatattatatc |
4952699 |
T |
|
| Q |
308 |
actttacaaagcaaagtgatacatccaatttcgacatatttatagataaacaaactaggtcactacgggttatccatgagttctcagttactcactcatc |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| ||| ||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4952698 |
gctttacaaagcaaagtgatacatccaatttcgacgtatttataaatagacaaattaggtcactacgggttatccatgagttcccagttactcactcatc |
4952599 |
T |
|
| Q |
408 |
ctcctctagagcatgttacctttttatggtagtgtattgctggtgtttattttaattgtagagttttgatgtaattatggtctaagagcttataaaaaat |
507 |
Q |
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| T |
4952598 |
ctcctctaggacgtgttacctttttatggtagtgtattgctggtgtttattttaatcgtagagttttgatgtaattatggtctaagagcttataaaaaaa |
4952499 |
T |
|
| Q |
508 |
tatattataatggtcccaacccatgtctctga-nnnnnnnnnnatcacctatataaatatacttatgttattttc |
581 |
Q |
| |
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| T |
4952498 |
tatattataatggtcccaacccatgtttctgatttttttttttatcacctagataaatatacttatgttattttc |
4952424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 648 - 916
Target Start/End: Complemental strand, 4952245 - 4951977
Alignment:
| Q |
648 |
cagatccatcaccgataattaattaatatctaaattcttcgtttatactttcggtcttaactcttaacacgtagcatcaaattgaattctttnnnnnnnn |
747 |
Q |
| |
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| T |
4952245 |
cagatccatcactgataattaattaatatctaaattcttcgtttatactttcggtcttaactcttaacacgttgcatcaaattgaattctttaaaaaaaa |
4952146 |
T |
|
| Q |
748 |
taatggagttatttttcaaggaaaataaatactaatgaagctattcttcgtaatggtatgaccagaacggcagagagggccaaactacgcaactttgttc |
847 |
Q |
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|||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4952145 |
taatggagttttttttcaaggaaaataaatactaattaagccattcttcgtaatggtatgaccagaacggcagagagggccaaactacgcaactttgttc |
4952046 |
T |
|
| Q |
848 |
cttaaaaatatgaataatcatcattaataattaatcaatcatcttctgtataaaaatattcataaccat |
916 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4952045 |
cttaaaaatatgaataatcatcattaataattaatcaatcatcttctgtataaaaatattcataaccat |
4951977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 11139125 - 11139019
Alignment:
| Q |
30 |
aactcattgcctcacgatacaaaaggcctttaatttctgctacgacacatgctaaaccaatgaaatagcatcctaatcttgtatttattagatatctgag |
129 |
Q |
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||||||| |||||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||| |||||| | ||||||||||||||||| | |
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| T |
11139125 |
aactcatggcctcacgatacaaaaagccttcaatttctgctacgacacatgcgaaaccattgaaata--tgcctaatataatatttattagatatctg-g |
11139029 |
T |
|
| Q |
130 |
gggagccatg |
139 |
Q |
| |
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|||||||||| |
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| T |
11139028 |
gggagccatg |
11139019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 30349862 - 30349795
Alignment:
| Q |
102 |
ctaatcttgtatttattagatatctgaggggagccatgattatcatgggatcccataaagatccgtca |
169 |
Q |
| |
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||||||| ||||||||||||||| || ||||||||||| || |||||| |||||| ||||||||||| |
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| T |
30349862 |
ctaatctagtatttattagatatatggggggagccatggctaccatgggctcccatgaagatccgtca |
30349795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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