View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3395R-Insertion-5 (Length: 809)
Name: NF3395R-Insertion-5
Description: NF3395R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3395R-Insertion-5 |
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Alignment Details
Target: chr6 (Bit Score: 614; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 8 - 702
Target Start/End: Original strand, 1723220 - 1723919
Alignment:
| Q |
8 |
atgatgttcacatttcttctcgaatgatgattaaaactaattagtatcactata------attatgtaagtgtagcttaattgatggaaacattacatta |
101 |
Q |
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| T |
1723220 |
atgatgttcacatttcttctcgaatgatgattaaaactaattagtatcactataattataattatgtgagtgtagcttaattgatagaaacatttcatta |
1723319 |
T |
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| Q |
102 |
tatatacagagttcggagtttgaatatatatattatgaagcttctagtatagtatcaagtcatgtgttttgtcttgcactagccagtttgattacccatg |
201 |
Q |
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| T |
1723320 |
tatatacagaattcggggtttgaatatatatattatgaagcttctagtatagtatctagtcatgtgttttgtcttgcactagccagtttgattacccatg |
1723419 |
T |
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| Q |
202 |
cacaaccaatcatgtcttcaatttgcagatagctatacattaattggatgagggaatttttaagaaatggcaaaaggaaatgatactatttatttttaaa |
301 |
Q |
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| T |
1723420 |
cacaaccaatcatgtcttcaatttgcagatagctatacattaattggatgagggaatttttaagaaatggcaaaaggaaatgatactatttatttttaaa |
1723519 |
T |
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| Q |
302 |
ttaggagttatataaagtttgtaaggtaatcaaaagactaattagaattctaaaaattacgtattaatgttacaaaatagttatctaaataaataaatat |
401 |
Q |
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| T |
1723520 |
ttaggagttatataaattttgtaaggtaatcaaaagactaattagaattctaaaaattacgtattaatgttacaaaatagttatttaaataaataaatat |
1723619 |
T |
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| Q |
402 |
ttgggatatggttacaaaaatcatggggatagtgaggaagctagaaaggatcaattgggatatatgacatgttcactcaagaaatggtgggcgacttatt |
501 |
Q |
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| T |
1723620 |
ttgggatatggttacaaaaatcatggggatagtgaggaagctagaaaggatcaattgggatatatgatatgttcactcaagaaatggtggacgacttatt |
1723719 |
T |
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| Q |
502 |
agttcatactgaatttgtttgggacgaaatgattccactgaaggtctctctttttgttaggtgctttttcaaaaatagatcaccaacaaaggataatttg |
601 |
Q |
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| T |
1723720 |
agttcatactgaatttgtttggaacgaaatgattttactgaaggtctctctttttgttaggtgctttttcaaaaatagatcaccaacaaaggataattta |
1723819 |
T |
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| Q |
602 |
atttattcgtggtattattaactaaggataatttgatttatctagtatcattgactttgattatttaccatgcttaggagggtgtagaaaggaagaaaat |
701 |
Q |
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| T |
1723820 |
attta-tcgtggtattattaactaaggataatttgatttatctagtatcattgactttgattatttaccatgcttaggagggtgtagaaaggaagaaaat |
1723918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 760 - 795
Target Start/End: Original strand, 1723980 - 1724015
Alignment:
| Q |
760 |
gaattgcttggacattcatagtgttcttcctaatat |
795 |
Q |
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| T |
1723980 |
gaatttcttggacattcatagtgttcttcctaatat |
1724015 |
T |
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