View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3395R-Insertion-6 (Length: 771)
Name: NF3395R-Insertion-6
Description: NF3395R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3395R-Insertion-6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 9 - 340
Target Start/End: Original strand, 11585387 - 11585718
Alignment:
| Q |
9 |
agttgaaatatgtgtaatttattcatttatatacttttcagtgattactttaccagaaggaaggagatgtgtaatgaaacttgcacatcaggtgcttaag |
108 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11585387 |
agttgaaatatgtgtgatttattcatttatatacttttcagtgattactttaccagaaggaaagagatgtgtaatgaaacttgcacatcaggtgcttaag |
11585486 |
T |
|
| Q |
109 |
gagttcagtaaaaatttaacaatctcaagcaaatcagatttaccattatactttgctgatactgatgatagcggggttaggttttcgattcgaaaaaata |
208 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11585487 |
gagttcagtaaaaatttaacaatgtcaagcaaatcagatttaccacaatacattgctgatactgatgatagcggggttaggttttcgattcgaaaaaata |
11585586 |
T |
|
| Q |
209 |
gaaacttatttctgtcaaatgatccattcattgttattgttgctagctccgtttcgttacctctcccatctcatactgttttcgacttcttaagagatcc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11585587 |
gaaacttatttctgtcaaatgatccattcattgttattgttgctagctccgtttcgttacctctcccatctcatactgttttcgacttcttaagagatcc |
11585686 |
T |
|
| Q |
309 |
tgcaagacgttttgaggttcaaagaatcttcg |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
11585687 |
tgcaagacgttttgaggttcaaagaatcttcg |
11585718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 9 - 340
Target Start/End: Original strand, 11597563 - 11597894
Alignment:
| Q |
9 |
agttgaaatatgtgtaatttattcatttatatacttttcagtgattactttaccagaaggaaggagatgtgtaatgaaacttgcacatcaggtgcttaag |
108 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11597563 |
agttgaaatatgtgtgatttattcatttatatacttttcagtgattactttaccagaaggaaggagatgtgtaatgaaacttgcacatcaggtgcttaag |
11597662 |
T |
|
| Q |
109 |
gagttcagtaaaaatttaacaatctcaagcaaatcagatttaccattatactttgctgatactgatgatagcggggttaggttttcgattcgaaaaaata |
208 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11597663 |
gagttcagtaaaaatttaacaatgtcaagcaaatcagatttaccacaatacattgctgataccgatgatagcggggttaggttttcgattccaaaaaata |
11597762 |
T |
|
| Q |
209 |
gaaacttatttctgtcaaatgatccattcattgttattgttgctagctccgtttcgttacctctcccatctcatactgttttcgacttcttaagagatcc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11597763 |
gaaacttatttctgtcaaatgatccattcattgttattgttgctagctccgtttccttacctctcccatctcatactgttttcgacttcttaagagatcc |
11597862 |
T |
|
| Q |
309 |
tgcaagacgttttgaggttcaaagaatcttcg |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
11597863 |
tgcaagacgttttgaggttcaaagaatcttcg |
11597894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 416 - 764
Target Start/End: Original strand, 11585794 - 11586147
Alignment:
| Q |
416 |
cacgcagtgggataagttttgtgacggaaatccatggcatgaaattgcacacatctctactggaactcatcccaaccactatgtatcaattattcaggta |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11585794 |
cacgcagtgggataagttttgtgacggaaatccatggcatgaaattgcacacatctctactggaactcatcccaaccactatgtatcaattattcaggta |
11585893 |
T |
|
| Q |
516 |
tttaccatattttatttataaaagaatattttgannnnnnnnn--aatgttataaactatatcttaatttatatttatagccattttcctacacttccgt |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11585894 |
tttaccatattttatttataaaagaatattttgatttttttttttaatgttataaactatatcttaatttatatttatagccattttcctacacttccgt |
11585993 |
T |
|
| Q |
614 |
ccatgtcatttcaaat---gaacgtatgatgcacctcatttgtgtgaagattgtttcaattattttcaaatttggtgccaacttctcaatatttaggctt |
710 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11585994 |
ccatgtcatttcaaataatgaacatatgatgcacctcatttgtgtgaagattgtttcaattattttcaaatttggtgccaacttctcaatatttaggctt |
11586093 |
T |
|
| Q |
711 |
attagggcaaatgtatccccccttttgttcttgtacttctgtagttagcttgtt |
764 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11586094 |
attagggcaaatgtagcctcccttttgttcttgtacttctgtagttagcttgtt |
11586147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 559 - 764
Target Start/End: Original strand, 11598531 - 11598736
Alignment:
| Q |
559 |
aatgttataaactatatcttaatttatatttatagccattttcctacacttccgtccatgtcatttcaaatgaacgtatgatgcacctcatttgtgtgaa |
658 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11598531 |
aatgttataaactatatcttaatttatatttattgccattttcctacacttccgtccatgtcatttcaaatgaacatatgatgcacctcatttgtgtgaa |
11598630 |
T |
|
| Q |
659 |
gattgtttcaattattttcaaatttggtgccaacttctcaatatttaggcttattagggcaaatgtatccccccttttgttcttgtacttctgtagttag |
758 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11598631 |
gattgtttcaattattttcaaatttggtgccaacttctcaatatttaggcttattagggcaaacgtagccccccttttgttcttgtacttctgtagttag |
11598730 |
T |
|
| Q |
759 |
cttgtt |
764 |
Q |
| |
|
|||||| |
|
|
| T |
11598731 |
cttgtt |
11598736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 142 - 335
Target Start/End: Original strand, 11608770 - 11608965
Alignment:
| Q |
142 |
tcagatttaccattatactttgctgatactgatgatagcggggttaggttttcgattcgaaaaaatagaaacttatttctgtcaaatgatccattcattg |
241 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
11608770 |
tcagatttaccacaatacattgctgatactgatgatagcggggttaggttttcgattccaaaaaacaaaaacttatttctgtcaaatgatccattcattg |
11608869 |
T |
|
| Q |
242 |
ttattgttgctagctccgtttcgttacctctcccatctcatactgttttcgacttcttaaga--gatcctgcaagacgttttgaggttcaaagaat |
335 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11608870 |
ttattgttgctagctccgtttcgatacctctcccatctcatattgttttcgacttcttaagatcgatcctgcaagacgttttgaggttcaaagaat |
11608965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 416 - 549
Target Start/End: Original strand, 11597970 - 11598103
Alignment:
| Q |
416 |
cacgcagtgggataagttttgtgacggaaatccatggcatgaaattgcacacatctctactggaactcatcccaaccactatgtatcaattattcaggta |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11597970 |
cacgcagtgggataagttttgtgacggaaatccatggcatgaaattgcacacatctctactggaactcatcccaaccactatgtatcaattattcaggta |
11598069 |
T |
|
| Q |
516 |
tttaccatattttatttataaaagaatattttga |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
11598070 |
tttaccatattttatttataaaagaatattttga |
11598103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 419 - 485
Target Start/End: Original strand, 11609046 - 11609112
Alignment:
| Q |
419 |
gcagtgggataagttttgtgacggaaatccatggcatgaaattgcacacatctctactggaactcat |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11609046 |
gcagtgggataagttttgtgacggaaatccatggcatgaaattgcacacatctctactggaactcat |
11609112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 663 - 699
Target Start/End: Original strand, 11609182 - 11609218
Alignment:
| Q |
663 |
gtttcaattattttcaaatttggtgccaacttctcaa |
699 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11609182 |
gtttcaattattttcaaatttgatgccaacttctcaa |
11609218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 656
Target Start/End: Original strand, 11609109 - 11609146
Alignment:
| Q |
619 |
tcatttcaaatgaacgtatgatgcacctcatttgtgtg |
656 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11609109 |
tcatttcaaatgaagatatgatgcacctcatttgtgtg |
11609146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University